Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

34328822 .. 34330032

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCAAGCTTGGAGAAGCCACTTGTTTTTGATAGGATTCAGGAATTCTCTTCTAGTGTTTGCAGGTCAAGAAGAGCAGATGATGTTGAAGAAGGAACAAGTTGTAGCACATCCAATAGCCGCGAAGTAGAGTATACAAGAGACTACTTCTCTTTCAGCAAAAAGACTTGGAGCTTTGGCAGGAATCACAAGGCTTTCAGAAATGGTTTTGAATCATGGTTCTTGCCAGATGATCAATTTAACTCCGAGACCAAGTGCAATGAAAAAGATGCAACACGTAAGTTCCTGAACGGAATAAGATTACCAAAGTTTGTTAAGATAGTAGAAGTAGGTCCAAGAGACGGTCTACAAAATGAGAAGAAGATCGTATCTGCAACTATAAAGATTGAGCTGATTCATAGGCTGATTTCTTCTGGGTTGTCTGTTGTTGAGGCTACAAGTTTTGTATCACCCAAATGGGTTCCTCAGCTAGCAGATGCAAAGGATGTAATGGAAGCGGTTCGCAATCTCGAGGGTAGTGCTGCATTGCCTGTTCTGACACCTAATTTGAAAGGATTTGAAGCAGCTGTTGCAGCTGGTGCTAAGGTCGTAGCAGTCTTTGCATCAGCTTCCGAGTCATTTTCAAAGGCGAACATCAATTGTAGCGTAGAAGAGAGTCTTGTTCGTTACCGAGCTGTTACTCGTGCTGCAAAGGAGCTTTCCATTCCTGTTCGAGGGTATGTATCATGTGCCATTGGATGTCCAGAAGAGGGAGCAATTCCCCCATCAAAAGTGGCATATGTAGCAAAACAACTCTATGACATGGGCTGCTTTGAAATTTCTCTTGCCGACACGACCGGAATTGCTGTGATGGCTGTTGTTCCTGTTGAGAAGCTAGCTGTTCATTTCCATGATACGTACGGGCATTCTCTTCCAAATATTCTAGCCTCTCTTCAAATGGGGATTGGCACAGGAGCTTCCGGTAACGTTGCCACTGAAGATGTTGTATACATGCTTAGTGAACTTGGTGTGGAAACCAATGTGGATTTGGCCAAGCTCCTGGTGGCTGGTGATTTCATCAGCAGGCATTTAGGTCGCCCGTCTGGTTCAAAGATCGCCATTGCCTCGAGTCCTGTTAAAGCTGATGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

377

Amino Acids

40.82

Weight (kDa)

6.35

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	105 - 352	2.9e-39	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	54
AccI	GTMKAC	3 cut(s)	134, 346, 987
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	121, 497
AclI	AACGTT	1 cut(s)	966
AcoI	YGGCCR	1 cut(s)	1029
AcsI	RAATTY	2 cut(s)	44, 816
AcuI	CTGAAG	1 cut(s)	996
AfaI	GTAC	1 cut(s)	899
AfiI	CCNNNNNNNGG	3 cut(s)	341, 713, 749
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	8 cut(s)	89, 212, 550, 560, 624, 815, 935, 1089
AjnI	CCWGG	1 cut(s)	1038
Alw26I	GTCTC	3 cut(s)	135, 242, 333
Ama87I	CYCGRG	2 cut(s)	509, 1105
AoxI	GGCC	1 cut(s)	1029
ApeKI	GCWGC	5 cut(s)	521, 563, 572, 686, 807
ApoI	RAATTY	2 cut(s)	44, 816
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	441, 1061
AsuNHI	GCTAGC	2 cut(s)	469, 874
AvaI	CYCGRG	2 cut(s)	509, 1105
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	1031
BauI	CACGAG	1 cut(s)	681
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	508, 575, 584, 673, 794
BccI	CCATC	2 cut(s)	772, 844
BcgI	CGANNNNNNTGC	4 cut(s)	500, 534, 1055, 1089
BciT130I	CCWGG	1 cut(s)	1040
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	135, 242, 333
BfaI	CTAG	4 cut(s)	54, 470, 875, 923
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	6 cut(s)	121, 522, 564, 573, 687, 808
BlsI	GCNGC	6 cut(s)	122, 523, 565, 574, 688, 809
Bme1390I	CCNGG	1 cut(s)	1040
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	2 cut(s)	509, 1105
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	1040
BmsI	GCATC	3 cut(s)	259, 466, 611
BmtI	GCTAGC	2 cut(s)	473, 878
Bpu10I	CCTNAGC	2 cut(s)	465, 582
BsaAI	YACGTR	2 cut(s)	278, 897
BsaI	GGTCTC	1 cut(s)	242
BsaWI	WCCGGW	2 cut(s)	836, 959
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 713, 749
Bse3DI	GCAATG	3 cut(s)	265, 524, 1098
BseBI	CCWGG	1 cut(s)	1040
BseGI	GGATG	3 cut(s)	110, 490, 743
BseLI	CCNNNNNNNGG	3 cut(s)	341, 713, 749
BseMI	GCAATG	3 cut(s)	265, 524, 1098
BseMII	CTCAG	1 cut(s)	479
BseXI	GCAGC	5 cut(s)	508, 575, 584, 673, 794
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	1 cut(s)	1031
BsiEI	CGRYCG	1 cut(s)	837
BsiHKCI	CYCGRG	2 cut(s)	509, 1105
BsiSI	CCGG	2 cut(s)	837, 960
BsiWI	CGTACG	1 cut(s)	897
BslI	CCNNNNNNNGG	3 cut(s)	341, 713, 749
BsmAI	GTCTC	3 cut(s)	135, 242, 333
BsmBI	CGTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	1 cut(s)	1031
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	2 cut(s)	509, 1105
Bsp143I	GATC	3 cut(s)	232, 363, 1092
BspACI	CCGC	2 cut(s)	121, 497
BspANI	GGCC	1 cut(s)	1031
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	54
BspOI	GCTAGC	2 cut(s)	473, 878
BspQI	GCTCTTC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	3 cut(s)	265, 524, 1098
BssMI	GATC	3 cut(s)	232, 363, 1092
BssNAI	GTATAC	2 cut(s)	135, 988
BssSI	CACGAG	1 cut(s)	681
Bst1107I	GTATAC	2 cut(s)	135, 988
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	6 cut(s)	55, 67, 645, 741, 915, 936
BstAPI	GCANNNNNTGC	3 cut(s)	569, 578, 599
BstBAI	YACGTR	2 cut(s)	278, 897
BstC8I	GCNNGC	3 cut(s)	471, 876, 1064
BstDEI	CTNAG	3 cut(s)	465, 582, 995
BstENI	CCTNNNNNAGG	1 cut(s)	711
BstF5I	GGATG	3 cut(s)	110, 490, 743
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	3 cut(s)	235, 366, 1095
BstMAI	GTCTC	3 cut(s)	135, 242, 333
BstMBI	GATC	3 cut(s)	232, 363, 1092
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	6 cut(s)	569, 572, 578, 599, 782, 851
BstNI	CCWGG	1 cut(s)	1040
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	1 cut(s)	1038
BstSNI	TACGTA	1 cut(s)	897
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	508, 575, 584, 673, 794
BstXI	CCANNNNNNTGG	1 cut(s)	1039
BstZ17I	GTATAC	2 cut(s)	135, 988
BsuRI	GGCC	1 cut(s)	1031
BtsCI	GGATG	3 cut(s)	110, 490, 743
BtsIMutI	CAGTG	1 cut(s)	972
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	471, 876, 1064
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	898
CviAII	CATG	5 cut(s)	216, 726, 802, 890, 991
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	3 cut(s)	465, 582, 995
DpnI	GATC	3 cut(s)	234, 365, 1094
DpnII	GATC	3 cut(s)	232, 363, 1092
EaeI	YGGCCR	1 cut(s)	1029
Eam1104I	CTCTTC	6 cut(s)	55, 67, 645, 741, 915, 936
EarI	CTCTTC	6 cut(s)	55, 67, 645, 741, 915, 936
Eco105I	TACGTA	1 cut(s)	897
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	996
Eco88I	CYCGRG	2 cut(s)	509, 1105
EcoNI	CCTNNNNNAGG	1 cut(s)	711
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	1038
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	5 cut(s)	219, 729, 805, 893, 994
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	5 cut(s)	215, 725, 801, 889, 990
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	3 cut(s)	134, 346, 987
Fnu4HI	GCNGC	6 cut(s)	121, 522, 564, 573, 687, 808
FokI	GGATG	3 cut(s)	97, 497, 750
Fsp4HI	GCNGC	6 cut(s)	121, 522, 564, 573, 687, 808
FspBI	CTAG	4 cut(s)	54, 470, 875, 923
GluI	GCNGC	6 cut(s)	121, 522, 564, 573, 687, 808
HaeIII	GGCC	1 cut(s)	1031
HapII	CCGG	2 cut(s)	837, 960
Hin1II	CATG	5 cut(s)	219, 729, 805, 893, 994
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	8 cut(s)	37, 184, 212, 394, 614, 655, 1108, 1127
HpaII	CCGG	2 cut(s)	837, 960
HphI	GGTGA	2 cut(s)	441, 1061
Hpy166II	GTNNAC	4 cut(s)	135, 347, 988, 1001
Hpy188I	TCNGA	4 cut(s)	200, 247, 537, 613
Hpy188III	TCNNGA	5 cut(s)	41, 69, 286, 509, 743
Hpy8I	GTNNAC	4 cut(s)	135, 347, 988, 1001
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	3 cut(s)	277, 896, 966
HpyCH4V	TGCA	9 cut(s)	63, 258, 272, 374, 479, 524, 572, 602, 689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	569, 572, 578, 599, 782, 851
HpyF3I	CTNAG	3 cut(s)	465, 582, 995
HpySE526I	ACGT	3 cut(s)	277, 896, 966
Hsp92II	CATG	5 cut(s)	219, 729, 805, 893, 994
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	232, 363, 1092
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	5 cut(s)	171, 694, 752, 953, 1041
Lsp1109I	GCAGC	5 cut(s)	508, 575, 584, 673, 794
LweI	GCATC	3 cut(s)	259, 466, 611
MaeI	CTAG	4 cut(s)	54, 470, 875, 923
MaeII	ACGT	3 cut(s)	277, 896, 966
MaeIII	GTNAC	3 cut(s)	665, 676, 962
MalI	GATC	3 cut(s)	234, 365, 1094
MboI	GATC	3 cut(s)	232, 363, 1092
MfeI	CAATTG	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	1031
MluCI	AATT	7 cut(s)	44, 236, 544, 637, 756, 816, 840
MluNI	TGGCCA	1 cut(s)	1031
MlyI	GAGTC	4 cut(s)	623, 664, 1117, 1121
MnlI	CCTC	7 cut(s)	424, 474, 505, 707, 742, 937, 1114
Mox20I	TGGCCA	1 cut(s)	1031
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	1031
MseI	TTAA	4 cut(s)	240, 315, 1116, 1132
MslI	CAYNNNNRTG	2 cut(s)	454, 888
Msp20I	TGGCCA	1 cut(s)	1031
MspA1I	CMGCKG	2 cut(s)	566, 575
MspI	CCGG	2 cut(s)	837, 960
MspR9I	CCNGG	1 cut(s)	1040
MunI	CAATTG	1 cut(s)	637
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	1040
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	6 cut(s)	569, 572, 578, 599, 782, 851
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	3 cut(s)	232, 363, 1092
NheI	GCTAGC	2 cut(s)	469, 874
NlaIII	CATG	5 cut(s)	219, 729, 805, 893, 994
NlaIV	GGNNCC	1 cut(s)	462
NspI	RCATGY	1 cut(s)	994
PaeR7I	CTCGAG	2 cut(s)	509, 1105
PciSI	GCTCTTC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	37, 184, 212, 394
Pfl23II	CGTACG	1 cut(s)	897
PkrI	GCNGC	6 cut(s)	122, 523, 565, 574, 688, 809
PleI	GAGTC	4 cut(s)	622, 663, 1116, 1121
PpsI	GAGTC	4 cut(s)	622, 663, 1116, 1121
Ppu21I	YACGTR	2 cut(s)	278, 897
Psp1406I	AACGTT	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	1038
PspGI	CCWGG	1 cut(s)	1038
PspLI	CGTACG	1 cut(s)	897
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	1105
PvuII	CAGCTG	2 cut(s)	566, 575
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
RseI	CAYNNNNRTG	2 cut(s)	454, 888
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	240, 315, 1116, 1132
SatI	GCNGC	6 cut(s)	121, 522, 564, 573, 687, 808
Sau3AI	GATC	3 cut(s)	232, 363, 1092
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	4 cut(s)	623, 664, 1117, 1121
ScrFI	CCNGG	1 cut(s)	1040
SfaNI	GCATC	3 cut(s)	259, 466, 611
Sfr274I	CTCGAG	2 cut(s)	509, 1105
SinI	GGWCC	1 cut(s)	332
SlaI	CTCGAG	2 cut(s)	509, 1105
SmiMI	CAYNNNNRTG	2 cut(s)	454, 888
SmlI	CTYRAG	2 cut(s)	509, 1105
SmoI	CTYRAG	2 cut(s)	509, 1105
SnaBI	TACGTA	1 cut(s)	897
Sse9I	AATT	7 cut(s)	44, 236, 544, 637, 756, 816, 840
SsiI	CCGC	2 cut(s)	121, 497
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	4 cut(s)	54, 470, 875, 923
StyD4I	CCNGG	1 cut(s)	1038
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	3 cut(s)	280, 899, 969
TaqI	TCGA	3 cut(s)	510, 712, 1106
TasI	AATT	7 cut(s)	44, 236, 544, 637, 756, 816, 840
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	37, 184, 212, 394
Tru1I	TTAA	4 cut(s)	240, 315, 1116, 1132
Tru9I	TTAA	4 cut(s)	240, 315, 1116, 1132
TscAI	CASTG	1 cut(s)	979
TseI	GCWGC	5 cut(s)	521, 563, 572, 686, 807
TspDTI	ATGAA	4 cut(s)	276, 386, 872, 1045
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	979
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	711
XapI	RAATTY	2 cut(s)	44, 816
XceI	RCATGY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1024, 1039
XhoI	CTCGAG	2 cut(s)	509, 1105
XmiI	GTMKAC	3 cut(s)	134, 346, 987
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	4 cut(s)	54, 470, 875, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.