Rw7G027280

Hydroxymethylglutaryl-CoA lyase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
35146549 .. 35147759
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027280.1

Sequence Viewer

Length: 1179 bp
ATGTCAAGCTTGGAGAAGCCACTTGTTTTTGATAGGATTCAGGAATTCTCTTCTAGTGTTTGCAGGTCAAGAAGAGCAGATGATGTTGAAGAAGGAACAAGTTGTAGCACATCCAATAGCCGCGAACAAAAGACTTGGAGCTTTGGCAGGAATCACAAGGCTTTCAGAAATGGTTTTGAATCATGGTTCTTGCCAGATGATCAATTTAACTCCAAGACCAAGTGCAATGAAAAAGATGCAACACGTAAGTTCCTGAACGGAATAAGATTACCAAAGTTTGTTAAGATAGTAGAAGTAGGTCCAAGAGACGGTCTACAAAATGAGAAGAAGATCGTATCTGCAACTATAAAGATTGAGCTGATTCATAGGCTGATTTCTTCTGGGTTGTCTGTTGTTGAGGCTACAAGTTTTGTATCACCCAAATGGGTTCCTCAGCTAGCAGATGCAAAGGATGTAATGGAAGCGGTTCGCAATCTCGAGGGTAGTGCTACATTGCCTGTTCTGACGCCTAATTTGAAAGGATTTGAAGCAGCTGTTGCAGCTGGTGCTAAGGTCGTAGCAGTCTTTGCATCAGCTTCCGAGTCATTTTCAAAGGCGAACATCAATTGTAGCGTAGAAGAGAGTCTTGTTCGTTACCGAGCTGTTACTCGTGCTGCAAAGGAGCTTTCCATTCCTGTTCGAGGGTATGTATCATGTGCCATTGGATGTCCAGAAGAGGGAGCAATTCCCCCATCAAAAGTGGCATATGTAGCAAAACAACTCTATGACATGGGCTGCTTTGAAATTTCTCTTGCCGACACGACCGGAATTGGTACCCCAACGACGGTTGTGCCAATGCTTGAAGCTGTGATGGCTGTTGTTCCTGTTGAGAAGCTAGCTGTTCATTTCCATGATACGTACGGGCATTCTCTTCCAAATATTCTTGCCTCTCTTCAAATGGGGATTGGCACAGTCGACTCCTCTGTTGCAGGTTTAGGTGGGTGTCCATATGCCAAGGGAGCTTCCGGTAACGTTGCCACTGAAGATGTTGTATACATGCTTAGTGAACTTGGTGTGGAAACCAATGTGGATTTGGCCAAGCTCCTGGTGGCTGGTGATTTCATCAGCAGGCATTTAGGTCGCCCGTCTGGTTCAAAGATCGCCATTGCCTCGAGTCCTGTAAAAGCTGATGACTCTTAG

Protein Analysis

392

Amino Acids

41.98

Weight (kDa)

6.62

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMGL-like PF00682 94 - 367 4.8e-56 HMGL-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 959
Acc65I GGTACC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 812
AccI GTMKAC 3 cut(s) 313, 954, 1032
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 121, 464
AclI AACGTT 1 cut(s) 1011
AcoI YGGCCR 1 cut(s) 1074
AcsI RAATTY 2 cut(s) 44, 783
AcuI CTGAAG 1 cut(s) 1041
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 2 cut(s) 814, 899
AfiI CCNNNNNNNGG 4 cut(s) 308, 680, 716, 823
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 9 cut(s) 89, 179, 517, 527, 591, 782, 842, 935, 1134
AjnI CCWGG 1 cut(s) 1083
Alw26I GTCTC 1 cut(s) 300
Ama87I CYCGRG 2 cut(s) 476, 1150
AoxI GGCC 1 cut(s) 1074
ApeKI GCWGC 4 cut(s) 530, 539, 653, 774
ApoI RAATTY 2 cut(s) 44, 783
ArsI GACNNNNNNTTYG 2 cut(s) 496, 528
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 812
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 408, 1106
AsuNHI GCTAGC 2 cut(s) 436, 874
AvaI CYCGRG 2 cut(s) 476, 1150
AvaII GGWCC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 1076
BanI GGYRCC 1 cut(s) 812
BauI CACGAG 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 542, 551, 640, 761
BccI CCATC 2 cut(s) 739, 844
BcgI CGANNNNNNTGC 6 cut(s) 467, 501, 811, 845, 1100, 1134
BciT130I CCWGG 1 cut(s) 1085
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 3 cut(s) 54, 437, 875
BfuAI ACCTGC 2 cut(s) 54, 959
BisI GCNGC 5 cut(s) 121, 531, 540, 654, 775
BlsI GCNGC 5 cut(s) 122, 532, 541, 655, 776
Bme1390I CCNGG 1 cut(s) 1085
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 2 cut(s) 476, 1150
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 429, 814
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 3 cut(s) 226, 433, 578
BmtI GCTAGC 2 cut(s) 440, 878
Bpu10I CCTNAGC 2 cut(s) 432, 549
BsaAI YACGTR 2 cut(s) 245, 897
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 993
BsaWI WCCGGW 2 cut(s) 803, 1004
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 680, 716, 823
Bse3DI GCAATG 3 cut(s) 232, 491, 1143
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 1 cut(s) 993
BseGI GGATG 3 cut(s) 110, 457, 710
BseLI CCNNNNNNNGG 4 cut(s) 308, 680, 716, 823
BseMI GCAATG 3 cut(s) 232, 491, 1143
BseMII CTCAG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 949
BseXI GCAGC 4 cut(s) 542, 551, 640, 761
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 804
BshFI GGCC 1 cut(s) 1076
BshNI GGYRCC 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 804
BsiHKCI CYCGRG 2 cut(s) 476, 1150
BsiSI CCGG 2 cut(s) 804, 1005
BsiWI CGTACG 1 cut(s) 897
BslI CCNNNNNNNGG 4 cut(s) 308, 680, 716, 823
BsmAI GTCTC 1 cut(s) 300
BsmBI CGTCTC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 1 cut(s) 1076
BsoBI CYCGRG 2 cut(s) 476, 1150
Bsp143I GATC 3 cut(s) 199, 330, 1137
BspACI CCGC 2 cut(s) 121, 464
BspANI GGCC 1 cut(s) 1076
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 429, 814
BspMI ACCTGC 2 cut(s) 54, 959
BspOI GCTAGC 2 cut(s) 440, 878
BspQI GCTCTTC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 812
BsrDI GCAATG 3 cut(s) 232, 491, 1143
BssECI CCNNGG 1 cut(s) 993
BssMI GATC 3 cut(s) 199, 330, 1137
BssNAI GTATAC 1 cut(s) 1033
BssNI GRCGYC 1 cut(s) 506
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 993
Bst1107I GTATAC 1 cut(s) 1033
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 3 cut(s) 311, 826, 952
Bst6I CTCTTC 6 cut(s) 55, 67, 612, 708, 915, 936
BstACI GRCGYC 1 cut(s) 506
BstAPI GCANNNNNTGC 3 cut(s) 536, 545, 566
BstBAI YACGTR 2 cut(s) 245, 897
BstC8I GCNNGC 3 cut(s) 438, 876, 1109
BstDEI CTNAG 4 cut(s) 432, 549, 1040, 1176
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 3 cut(s) 110, 457, 710
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 202, 333, 1140
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 3 cut(s) 199, 330, 1137
BstMCI CGRYCG 1 cut(s) 804
BstMWI GCNNNNNNNGC 7 cut(s) 536, 539, 545, 566, 749, 851, 998
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 1 cut(s) 1039
BstSCI CCNGG 1 cut(s) 1083
BstSNI TACGTA 1 cut(s) 897
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 542, 551, 640, 761
BstXI CCANNNNNNTGG 1 cut(s) 1084
BstZ17I GTATAC 1 cut(s) 1033
BsuRI GGCC 1 cut(s) 1076
BtsCI GGATG 3 cut(s) 110, 457, 710
BtsIMutI CAGTG 1 cut(s) 1017
BveI ACCTGC 2 cut(s) 54, 959
Cac8I GCNNGC 3 cut(s) 438, 876, 1109
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 1 cut(s) 514
Csp6I GTAC 2 cut(s) 813, 898
CviAII CATG 5 cut(s) 183, 693, 769, 890, 1036
CviQI GTAC 2 cut(s) 813, 898
DdeI CTNAG 4 cut(s) 432, 549, 1040, 1176
DpnI GATC 3 cut(s) 201, 332, 1139
DpnII GATC 3 cut(s) 199, 330, 1137
EaeI YGGCCR 1 cut(s) 1074
Eam1104I CTCTTC 6 cut(s) 55, 67, 612, 708, 915, 936
EarI CTCTTC 6 cut(s) 55, 67, 612, 708, 915, 936
Eco105I TACGTA 1 cut(s) 897
Eco130I CCWWGG 1 cut(s) 993
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 1041
Eco88I CYCGRG 2 cut(s) 476, 1150
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 1083
EcoT14I CCWWGG 1 cut(s) 993
ErhI CCWWGG 1 cut(s) 993
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 5 cut(s) 186, 696, 772, 893, 1039
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 5 cut(s) 182, 692, 768, 889, 1035
FauNDI CATATG 2 cut(s) 745, 988
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 3 cut(s) 313, 954, 1032
Fnu4HI GCNGC 5 cut(s) 121, 531, 540, 654, 775
FokI GGATG 3 cut(s) 97, 464, 717
Fsp4HI GCNGC 5 cut(s) 121, 531, 540, 654, 775
FspBI CTAG 3 cut(s) 54, 437, 875
GluI GCNGC 5 cut(s) 121, 531, 540, 654, 775
HaeIII GGCC 1 cut(s) 1076
HapII CCGG 2 cut(s) 804, 1005
HgaI GACGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 5 cut(s) 186, 696, 772, 893, 1039
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 9 cut(s) 37, 151, 179, 361, 581, 622, 956, 1153, 1172
HpaII CCGG 2 cut(s) 804, 1005
HphI GGTGA 2 cut(s) 408, 1106
Hpy166II GTNNAC 4 cut(s) 314, 955, 1033, 1046
Hpy188I TCNGA 3 cut(s) 167, 504, 580
Hpy188III TCNNGA 5 cut(s) 41, 69, 253, 476, 710
Hpy8I GTNNAC 4 cut(s) 314, 955, 1033, 1046
Hpy99I CGWCG 1 cut(s) 826
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 311, 826, 952
HpyCH4IV ACGT 3 cut(s) 244, 896, 1011
HpyCH4V TGCA 9 cut(s) 63, 225, 239, 341, 446, 539, 569, 656, 968
HpyF10VI GCNNNNNNNGC 7 cut(s) 536, 539, 545, 566, 749, 851, 998
HpyF3I CTNAG 4 cut(s) 432, 549, 1040, 1176
HpySE526I ACGT 3 cut(s) 244, 896, 1011
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 5 cut(s) 186, 696, 772, 893, 1039
KpnI GGTACC 1 cut(s) 816
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 199, 330, 1137
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 5 cut(s) 138, 661, 719, 998, 1086
Lsp1109I GCAGC 4 cut(s) 542, 551, 640, 761
LweI GCATC 3 cut(s) 226, 433, 578
MaeI CTAG 3 cut(s) 54, 437, 875
MaeII ACGT 3 cut(s) 244, 896, 1011
MaeIII GTNAC 3 cut(s) 632, 643, 1007
MalI GATC 3 cut(s) 201, 332, 1139
MboI GATC 3 cut(s) 199, 330, 1137
MfeI CAATTG 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 1076
MluCI AATT 7 cut(s) 44, 203, 511, 604, 723, 783, 807
MluNI TGGCCA 1 cut(s) 1076
MlyI GAGTC 5 cut(s) 590, 631, 950, 1162, 1166
MnlI CCTC 8 cut(s) 391, 441, 472, 674, 709, 937, 970, 1159
Mox20I TGGCCA 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 1076
MseI TTAA 2 cut(s) 207, 282
MslI CAYNNNNRTG 2 cut(s) 421, 888
Msp20I TGGCCA 1 cut(s) 1076
MspA1I CMGCKG 2 cut(s) 533, 542
MspI CCGG 2 cut(s) 804, 1005
MspR9I CCNGG 1 cut(s) 1085
MunI CAATTG 1 cut(s) 604
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 1 cut(s) 1085
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 7 cut(s) 536, 539, 545, 566, 749, 851, 998
NdeI CATATG 2 cut(s) 745, 988
NdeII GATC 3 cut(s) 199, 330, 1137
NheI GCTAGC 2 cut(s) 436, 874
NlaIII CATG 5 cut(s) 186, 696, 772, 893, 1039
NlaIV GGNNCC 2 cut(s) 429, 814
NspI RCATGY 1 cut(s) 1039
PaeR7I CTCGAG 2 cut(s) 476, 1150
PciSI GCTCTTC 1 cut(s) 67
PctI GAATGC 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 37, 151, 179, 361
Pfl23II CGTACG 1 cut(s) 897
PkrI GCNGC 5 cut(s) 122, 532, 541, 655, 776
PleI GAGTC 5 cut(s) 589, 630, 950, 1161, 1166
PpsI GAGTC 5 cut(s) 589, 630, 950, 1161, 1166
Ppu21I YACGTR 2 cut(s) 245, 897
Psp1406I AACGTT 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 1083
PspGI CCWGG 1 cut(s) 1083
PspLI CGTACG 1 cut(s) 897
PspN4I GGNNCC 2 cut(s) 429, 814
PspPI GGNCC 1 cut(s) 299
PspXI VCTCGAGB 1 cut(s) 1150
PvuII CAGCTG 2 cut(s) 533, 542
RsaI GTAC 2 cut(s) 814, 899
RsaNI GTAC 2 cut(s) 813, 898
RseI CAYNNNNRTG 2 cut(s) 421, 888
SalI GTCGAC 1 cut(s) 953
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 207, 282
SatI GCNGC 5 cut(s) 121, 531, 540, 654, 775
Sau3AI GATC 3 cut(s) 199, 330, 1137
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 5 cut(s) 590, 631, 950, 1162, 1166
ScrFI CCNGG 1 cut(s) 1085
SfaNI GCATC 3 cut(s) 226, 433, 578
Sfr274I CTCGAG 2 cut(s) 476, 1150
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 2 cut(s) 476, 1150
SmiMI CAYNNNNRTG 2 cut(s) 421, 888
SmlI CTYRAG 2 cut(s) 476, 1150
SmoI CTYRAG 2 cut(s) 476, 1150
SnaBI TACGTA 1 cut(s) 897
Sse9I AATT 7 cut(s) 44, 203, 511, 604, 723, 783, 807
SsiI CCGC 2 cut(s) 121, 464
SspI AATATT 1 cut(s) 919
SspMI CTAG 3 cut(s) 54, 437, 875
StyD4I CCNGG 1 cut(s) 1083
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 3 cut(s) 311, 826, 952
TaiI ACGT 3 cut(s) 247, 899, 1014
TaqI TCGA 4 cut(s) 477, 679, 954, 1151
TasI AATT 7 cut(s) 44, 203, 511, 604, 723, 783, 807
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 37, 151, 179, 361
Tru1I TTAA 2 cut(s) 207, 282
Tru9I TTAA 2 cut(s) 207, 282
TscAI CASTG 1 cut(s) 1024
TseI GCWGC 4 cut(s) 530, 539, 653, 774
TspDTI ATGAA 4 cut(s) 243, 353, 872, 1090
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 1024
VpaK11BI GGWCC 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 2 cut(s) 44, 783
XceI RCATGY 1 cut(s) 1039
XcmI CCANNNNNNNNNTGG 2 cut(s) 1069, 1084
XhoI CTCGAG 2 cut(s) 476, 1150
XmiI GTMKAC 3 cut(s) 313, 954, 1032
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 3 cut(s) 54, 437, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.