Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

38034975 .. 38039264

Gene Structure 4290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTGCGGAGTTTTAGCATTTGTCATGTTTTGTTAAGCCTTGAAGAGGTTATTGATGTGGTCCCCACTGAGAAGCTTGCTGTCCGTTTCCACGACACTTACGGCCAAGCTCTTCCAAATATACTAGTATCTCTTCAGATGGGCATCAGCACAGTGGATTCATTAGTCTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCTTCTGGCAATGTTGCCACCGAGGATGTTGTGTACATGCTTAATGGACTTGGAGTGAACACCAACATAGATCTTCAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTGGGGGCGCTCATCTGGTTCAAAGGCAGCGGTTGCCCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

119

Amino Acids

12.68

Weight (kDa)

5.14

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	14 - 102	4e-17	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	7, 345
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	44, 278, 337
AhlI	ACTAGT	1 cut(s)	124
AluBI	AGCT	3 cut(s)	76, 110, 283
AluI	AGCT	3 cut(s)	76, 110, 283
Alw26I	GTCTC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	172
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	326
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	354
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	47, 311
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	47, 311
BsnI	GGCC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	7, 345
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	3 cut(s)	39, 117, 138
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	78, 311
BstDEI	CTNAG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 348
BstNSI	RCATGY	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	66, 159
Cac8I	GCNNGC	2 cut(s)	78, 311
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	3 cut(s)	26, 238, 286
CviJI	RGCY	6 cut(s)	39, 76, 105, 110, 283, 293
CviKI_1	RGCY	6 cut(s)	39, 76, 105, 110, 283, 293
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	39, 117, 138
EarI	CTCTTC	3 cut(s)	39, 117, 138
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	29, 241, 289
FaiI	YATR	7 cut(s)	27, 122, 190, 192, 239, 269, 287
FaqI	GGGAC	2 cut(s)	47, 311
FatI	CATG	3 cut(s)	25, 237, 285
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	343
GsaI	CCCAGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	29, 241, 289
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	235, 259
Hpy188I	TCNGA	1 cut(s)	138
Hpy8I	GTNNAC	2 cut(s)	235, 259
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 348
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	29, 241, 289
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	117
LpnPI	CCDG	4 cut(s)	156, 192, 279, 316
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	125
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	56, 104, 125, 266
MflI	RGATCY	1 cut(s)	271
MnlI	CCTC	2 cut(s)	40, 217
MseI	TTAA	2 cut(s)	35, 243
MspA1I	CMGCKG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	200, 348
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	29, 241, 289
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	35, 243
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	61
SetI	ASST	5 cut(s)	51, 78, 112, 202, 285
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	124
SsiI	CCGC	2 cut(s)	7, 345
SspMI	CTAG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	35, 243
Tru9I	TTAA	2 cut(s)	35, 243
TscAI	CASTG	2 cut(s)	73, 159
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	73, 159
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	241
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.