Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

36802698 .. 36808257

Gene Structure 5560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGGAGGAGTGTGTATTACAGGAATGGAGCAGTTGCAGGGGCCCTGGACGCTTCCTCTTTGTCAACTCATCATATAAGCTCTTCAAGCAATAAGCCGGCATTAGGAAACATCCCAGAGTTTGTCAAGATAGTAGAAGTCGGTCCCAAGGATGGACTGCAGAATGAGAAGCAGATTATTCCTACTGATGTAAAGGTTCGGTTCATAGAAATGCTTGTTTCGTCCGGACTCACTGTTGTTGAGGCTACAAGTTTTGTCTCGCCCAAATGGATTCCACAGCTGGCAGATGCAAAGGATGTAATGGAAGCGATTCGGAATATGGGAGGTGCTAAATTTCCCGTTTTAACTCCTAATCTCAAAGGTTTTGAGGCGGCTGTTGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCCTCAGCTTCTGAGTCTTTCTCAAAATCAAACATAAATTGCAGTATTGAAGACAGTCTCAGACGTTACCGTGATGTTGCTGTTGCTGCAAAAAAGCTTTCTATTCCTGTTCGAGGATATATATCATGTGTTGTGGGGTGTCCAATGGAAGGAGCTGTAGCCCCATCTCAAGTAGCATATGTGGCCAAAGAACTTCTTGATATGGGTTGCTTTGACATTTCTCTTGGCGATACAATTGGTGTTGGTACTCCAGATTCAGGTATCGTCGTTCCAATGCTTGAAGAGGTTATTGATGTGGTCCCCACTGAGAAGCTTGCTGTCCATTTCCACGACACTTATGGCCAAGCTCTTTCAAATATACTAGTATCTCTTCAGATGGGCATCAGCACAGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

268

Amino Acids

28.44

Weight (kDa)

5.46

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	42 - 268	2.3e-39	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	1 cut(s)	371
AcoI	YGGCCR	2 cut(s)	591, 748
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	5 cut(s)	104, 152, 521, 557, 665
AgsI	TTSAA	4 cut(s)	87, 458, 689, 762
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	7 cut(s)	81, 280, 416, 505, 563, 721, 755
AluI	AGCT	7 cut(s)	81, 280, 416, 505, 563, 721, 755
Alw26I	GTCTC	2 cut(s)	262, 470
AlwNI	CAGNNNCTG	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	3 cut(s)	42, 591, 748
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	380, 494
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	4 cut(s)	42, 43, 143, 706
AvaII	GGWCC	2 cut(s)	143, 706
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	2 cut(s)	593, 750
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	465
BbvCI	CCTCAGC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	367, 481
BccI	CCATC	4 cut(s)	146, 410, 580, 778
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	262, 470
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	2 cut(s)	158, 564
BisI	GCNGC	3 cut(s)	372, 381, 495
BlsI	GCNGC	3 cut(s)	373, 382, 496
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	143, 706
BmgT120I	GGNCC	4 cut(s)	42, 43, 143, 706
BmiI	GGNNCC	4 cut(s)	43, 44, 145, 708
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	277, 798
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	561
BsaBI	GATNNNNATC	2 cut(s)	529, 788
BsaJI	CCNNGG	2 cut(s)	45, 147
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	5 cut(s)	104, 152, 521, 557, 665
Bse118I	RCCGGY	1 cut(s)	97
Bse8I	GATNNNNATC	2 cut(s)	529, 788
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	45, 147
BseGI	GGATG	3 cut(s)	111, 157, 301
BseJI	GATNNNNATC	2 cut(s)	529, 788
BseLI	CCNNNNNNNGG	5 cut(s)	104, 152, 521, 557, 665
BseMII	CTCAG	4 cut(s)	411, 426, 481, 705
BseRI	GAGGAG	2 cut(s)	19, 22
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	367, 481
BshFI	GGCC	3 cut(s)	44, 593, 750
BsiSI	CCGG	2 cut(s)	98, 225
BslFI	GGGAC	2 cut(s)	129, 692
BslI	CCNNNNNNNGG	5 cut(s)	104, 152, 521, 557, 665
BsmAI	GTCTC	2 cut(s)	262, 470
BsmFI	GGGAC	2 cut(s)	129, 692
BsnI	GGCC	3 cut(s)	44, 593, 750
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	224
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	3 cut(s)	44, 593, 750
BspCNI	CTCAG	4 cut(s)	412, 425, 480, 706
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	4 cut(s)	43, 44, 145, 708
BspMAI	CTGCAG	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	45, 147
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	4 cut(s)	235, 464, 479, 799
Bst6I	CTCTTC	3 cut(s)	88, 684, 783
BstC8I	GCNNGC	3 cut(s)	99, 282, 723
BstDEI	CTNAG	4 cut(s)	412, 420, 467, 714
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	111, 157, 301
BstMAI	GTCTC	2 cut(s)	262, 470
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 87, 377, 380, 386, 407, 494, 590
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	2 cut(s)	158, 564
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	367, 481
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	44, 593, 750
BtsCI	GGATG	3 cut(s)	111, 157, 301
BtsIMutI	CAGTG	3 cut(s)	231, 711, 804
Cac8I	GCNNGC	3 cut(s)	99, 282, 723
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	4 cut(s)	42, 43, 143, 706
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	1 cut(s)	534
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	4 cut(s)	412, 420, 467, 714
EaeI	YGGCCR	2 cut(s)	591, 748
Eam1104I	CTCTTC	3 cut(s)	88, 684, 783
EarI	CTCTTC	3 cut(s)	88, 684, 783
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	143, 706
Eco57I	CTGAAG	1 cut(s)	764
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	537
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	2 cut(s)	129, 692
FatI	CATG	1 cut(s)	533
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	372, 381, 495
FokI	GGATG	3 cut(s)	98, 164, 308
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	372, 381, 495
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	3 cut(s)	372, 381, 495
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	3 cut(s)	44, 593, 750
HapII	CCGG	2 cut(s)	98, 225
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	503, 719
HinfI	GANTC	5 cut(s)	228, 271, 310, 422, 662
HpaII	CCGG	2 cut(s)	98, 225
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	315, 421, 470, 783
Hpy188III	TCNNGA	4 cut(s)	127, 225, 605, 659
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	4 cut(s)	235, 464, 479, 799
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	6 cut(s)	38, 160, 290, 389, 450, 497
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 87, 377, 380, 386, 407, 494, 590
HpyF3I	CTNAG	4 cut(s)	412, 420, 467, 714
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	1 cut(s)	537
Kpn2I	TCCGGA	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	29, 560
Lsp1109I	GCAGC	2 cut(s)	367, 481
LweI	GCATC	2 cut(s)	277, 798
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	473
MboII	GAAGA	4 cut(s)	75, 470, 701, 770
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	2 cut(s)	593, 750
MluCI	AATT	3 cut(s)	332, 445, 642
MluNI	TGGCCA	2 cut(s)	593, 750
MlyI	GAGTC	2 cut(s)	222, 431
MnlI	CCTC	7 cut(s)	67, 235, 317, 361, 421, 515, 685
Mox20I	TGGCCA	2 cut(s)	593, 750
MroI	TCCGGA	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	2 cut(s)	593, 750
MseI	TTAA	2 cut(s)	344, 805
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	2 cut(s)	593, 750
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	2 cut(s)	98, 225
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	8 cut(s)	50, 87, 377, 380, 386, 407, 494, 590
NaeI	GCCGGC	1 cut(s)	99
NdeI	CATATG	1 cut(s)	586
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	537
NlaIV	GGNNCC	4 cut(s)	43, 44, 145, 708
PciSI	GCTCTTC	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	271, 310, 662
PkrI	GCNGC	3 cut(s)	373, 382, 496
PleI	GAGTC	2 cut(s)	222, 430
PpsI	GAGTC	2 cut(s)	222, 430
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	4 cut(s)	43, 44, 145, 708
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	4 cut(s)	42, 43, 143, 706
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	344, 805
SatI	GCNGC	3 cut(s)	372, 381, 495
Sau96I	GGNCC	4 cut(s)	42, 43, 143, 706
SchI	GAGTC	2 cut(s)	222, 431
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	277, 798
SfcI	CTRYAG	2 cut(s)	158, 564
SinI	GGWCC	2 cut(s)	143, 706
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	3 cut(s)	332, 445, 642
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	4 cut(s)	235, 464, 479, 799
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	520
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	332, 445, 642
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	3 cut(s)	271, 310, 662
Tru1I	TTAA	2 cut(s)	344, 805
Tru9I	TTAA	2 cut(s)	344, 805
TscAI	CASTG	3 cut(s)	238, 718, 804
TseI	GCWGC	2 cut(s)	380, 494
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	3 cut(s)	238, 718, 804
VpaK11BI	GGWCC	2 cut(s)	143, 706
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.