Rh7AG320300

Hydroxymethylglutaryl-CoA lyase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
36254047 .. 36255258
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG320300.1

Sequence Viewer

Length: 1212 bp
ATGTCAAGCTTGGAGAAGCCACTTGTTTTTGATAGGATTCAGGAATTCTCTTCTAGTGTTTGCAGGTCAAGAAGAGCAGATGATGTTGAAGAAGGAACAAGTTGTAGCACATCCAATAGCCGCGAAGAAGAGTATACAAGAGACTACTTCTCTTTCAGCAAAAAGACTTTGAGCTTTGGCAGGAATCACAAGGCTTTCAGAAATGGTTTTGAATCATGGTTCTTGCCAGATGATCAATTTAACTCCAAGACCAAGTGCAATGAAAAAGATGCAACACGTAAGTTCCTGAACCGAATAGGATTACCAAAGTTTGTTAAGATAGTAGAAGTAGGTCCAAGAGACGGTCTACAAAATGAGAAGAAGATCGTATCTGCAGCTTCAAAGATTGAGCTGATTCATAGGCTGATTTCTTCTGGGTTGTCTGTTGTTGAGGCTACAAGTTTTGTATCACCCAAATGGGTTCCTCAGCTAGCAGATGCAAAGGATGTAATGGAAGCGGTCCGCAATCTCGAGGGTAGTGCTACATTGCCTGTTCTGACACCTAATTTGAAAGGATTTGAAGCAGCTATTGCATCTGGTGCTAAGGTCGTAGCAGTCTTTGCATCAGCTTCCGAGTCATTTTCGAAGGCGAACATCAATTGTAGCATAGAAGAAAGTCTTGTTCGTTACCGAGCTGTTACTCGTGCTGCCAAGGAGCTTTCCATTCCTGTTCGAGGGTATGTATCATGTGCCATTGGATGTCCAGAAGAGGGAGCAATTCCCCCATCAAAAGTGGCATATGTAGCAAAACAACTCTATGACATGGGCTGCTTTGAAATTTCTCTTGCCGACACGACCGGAATCGGTACCCCAACGACGGTTGTGCCAATGCTTGAAGCTGTGATGGCTGTTGTTCCTGTTGAGAAGCTAGCTGTTCATTTCCATGACACGTACGGGCAATCTCTTCCAAATATTCTAGTCTCTCTTCAAATGGGGATATGCACAGTCGACTCCTCTGTTGCAGGTTTGGGTGGGTGTCCATATGCCAAGGGAGCTTCCGGTAACGTTGCCACTGAAGATGTTGTATACATGCTTAGTGAACTTGGTGTGGAAACCAATGTGGATTTGGCCAAGCTCCTGGTGGCTGGTGATTTCATCAGCAGGCATTTAGGTCGCCCGTCTGGTTCAAAGATCGCCATTGCCTCGAGTCCTGTTAAAGCTGATGACTCTTAG

Protein Analysis

403

Amino Acids

43.39

Weight (kDa)

6.28

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMGL-like PF00682 105 - 378 1e-55 HMGL-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 992
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 4 cut(s) 134, 346, 987, 1065
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 121, 497, 502
AclI AACGTT 1 cut(s) 1044
AcoI YGGCCR 1 cut(s) 1107
AcsI RAATTY 2 cut(s) 44, 816
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 2 cut(s) 847, 932
AfiI CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
AflIII ACRYGT 2 cut(s) 275, 927
AgsI TTSAA 9 cut(s) 89, 212, 381, 550, 560, 815, 875, 968, 1167
AjnI CCWGG 1 cut(s) 1116
Alw26I GTCTC 3 cut(s) 135, 333, 964
Ama87I CYCGRG 2 cut(s) 509, 1183
AoxI GGCC 1 cut(s) 1107
ApeKI GCWGC 4 cut(s) 374, 563, 686, 807
ApoI RAATTY 2 cut(s) 44, 816
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
Asp718I GGTACC 1 cut(s) 845
AspS9I GGNCC 2 cut(s) 332, 499
AsuHPI GGTGA 2 cut(s) 441, 1139
AsuII TTCGAA 1 cut(s) 623
AsuNHI GCTAGC 2 cut(s) 469, 907
AvaI CYCGRG 2 cut(s) 509, 1183
AvaII GGWCC 2 cut(s) 332, 499
BalI TGGCCA 1 cut(s) 1109
BanI GGYRCC 1 cut(s) 845
BauI CACGAG 1 cut(s) 681
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 386, 575, 673, 794
BccI CCATC 2 cut(s) 772, 877
BcgI CGANNNNNNTGC 6 cut(s) 500, 534, 844, 878, 1133, 1167
BciT130I CCWGG 1 cut(s) 1118
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 135, 333, 964
BfaI CTAG 4 cut(s) 54, 470, 908, 956
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 2 cut(s) 54, 992
BisI GCNGC 5 cut(s) 121, 375, 564, 687, 808
BlsI GCNGC 5 cut(s) 122, 376, 565, 688, 809
Bme1390I CCNGG 1 cut(s) 1118
Bme18I GGWCC 2 cut(s) 332, 499
BmeT110I CYCGRG 2 cut(s) 509, 1183
BmgT120I GGNCC 2 cut(s) 332, 499
BmiI GGNNCC 2 cut(s) 462, 847
BmrFI CCNGG 1 cut(s) 1118
BmsI GCATC 4 cut(s) 259, 466, 581, 611
BmtI GCTAGC 2 cut(s) 473, 911
Bpu10I CCTNAGC 2 cut(s) 465, 582
Bpu14I TTCGAA 1 cut(s) 623
BsaAI YACGTR 2 cut(s) 278, 930
BsaJI CCNNGG 2 cut(s) 690, 1026
BsaWI WCCGGW 2 cut(s) 836, 1037
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
Bse3DI GCAATG 3 cut(s) 265, 524, 1176
BseBI CCWGG 1 cut(s) 1118
BseDI CCNNGG 2 cut(s) 690, 1026
BseGI GGATG 3 cut(s) 110, 490, 743
BseLI CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
BseMI GCAATG 3 cut(s) 265, 524, 1176
BseMII CTCAG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 982
BseXI GCAGC 4 cut(s) 386, 575, 673, 794
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 837
BshFI GGCC 1 cut(s) 1109
BshNI GGYRCC 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 837
BsiHKCI CYCGRG 2 cut(s) 509, 1183
BsiSI CCGG 2 cut(s) 837, 1038
BsiWI CGTACG 1 cut(s) 930
BslI CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
BsmAI GTCTC 3 cut(s) 135, 333, 964
BsmBI CGTCTC 1 cut(s) 333
BsnI GGCC 1 cut(s) 1109
BsoBI CYCGRG 2 cut(s) 509, 1183
Bsp119I TTCGAA 1 cut(s) 623
Bsp143I GATC 3 cut(s) 232, 363, 1170
BspACI CCGC 3 cut(s) 121, 497, 502
BspANI GGCC 1 cut(s) 1109
BspCNI CTCAG 1 cut(s) 478
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 462, 847
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 2 cut(s) 54, 992
BspOI GCTAGC 2 cut(s) 473, 911
BspQI GCTCTTC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 845
BsrDI GCAATG 3 cut(s) 265, 524, 1176
BssECI CCNNGG 2 cut(s) 690, 1026
BssMI GATC 3 cut(s) 232, 363, 1170
BssNAI GTATAC 2 cut(s) 135, 1066
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 2 cut(s) 690, 1026
Bst1107I GTATAC 2 cut(s) 135, 1066
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 3 cut(s) 344, 859, 985
Bst6I CTCTTC 6 cut(s) 55, 67, 123, 741, 948, 969
BstAPI GCANNNNNTGC 3 cut(s) 569, 578, 599
BstBAI YACGTR 2 cut(s) 278, 930
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 471, 909, 1142
BstDEI CTNAG 4 cut(s) 465, 582, 1073, 1209
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 3 cut(s) 110, 490, 743
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 235, 366, 1173
BstMAI GTCTC 3 cut(s) 135, 333, 964
BstMBI GATC 3 cut(s) 232, 363, 1170
BstMCI CGRYCG 1 cut(s) 837
BstMWI GCNNNNNNNGC 6 cut(s) 569, 578, 599, 782, 884, 1031
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 386, 575, 673, 794
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstZ17I GTATAC 2 cut(s) 135, 1066
BsuRI GGCC 1 cut(s) 1109
BtsCI GGATG 3 cut(s) 110, 490, 743
BtsIMutI CAGTG 1 cut(s) 1050
BveI ACCTGC 2 cut(s) 54, 992
Cac8I GCNNGC 3 cut(s) 471, 909, 1142
Cfr13I GGNCC 2 cut(s) 332, 499
CpoI CGGWCCG 1 cut(s) 499
Csp6I GTAC 2 cut(s) 846, 931
CspI CGGWCCG 1 cut(s) 499
CviAII CATG 5 cut(s) 216, 726, 802, 923, 1069
CviQI GTAC 2 cut(s) 846, 931
DdeI CTNAG 4 cut(s) 465, 582, 1073, 1209
DpnI GATC 3 cut(s) 234, 365, 1172
DpnII GATC 3 cut(s) 232, 363, 1170
EaeI YGGCCR 1 cut(s) 1107
Eam1104I CTCTTC 6 cut(s) 55, 67, 123, 741, 948, 969
EarI CTCTTC 6 cut(s) 55, 67, 123, 741, 948, 969
Eco130I CCWWGG 2 cut(s) 690, 1026
Eco47I GGWCC 2 cut(s) 332, 499
Eco57I CTGAAG 1 cut(s) 1074
Eco88I CYCGRG 2 cut(s) 509, 1183
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 1116
EcoT14I CCWWGG 2 cut(s) 690, 1026
ErhI CCWWGG 2 cut(s) 690, 1026
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 5 cut(s) 219, 729, 805, 926, 1072
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 5 cut(s) 215, 725, 801, 922, 1068
FauNDI CATATG 2 cut(s) 778, 1021
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 4 cut(s) 134, 346, 987, 1065
Fnu4HI GCNGC 5 cut(s) 121, 375, 564, 687, 808
FokI GGATG 3 cut(s) 97, 497, 750
Fsp4HI GCNGC 5 cut(s) 121, 375, 564, 687, 808
FspBI CTAG 4 cut(s) 54, 470, 908, 956
GluI GCNGC 5 cut(s) 121, 375, 564, 687, 808
HaeIII GGCC 1 cut(s) 1109
HapII CCGG 2 cut(s) 837, 1038
Hin1II CATG 5 cut(s) 219, 729, 805, 926, 1072
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 9 cut(s) 37, 184, 212, 394, 614, 840, 989, 1186, 1205
HpaII CCGG 2 cut(s) 837, 1038
HphI GGTGA 2 cut(s) 441, 1139
Hpy166II GTNNAC 5 cut(s) 135, 347, 988, 1066, 1079
Hpy188I TCNGA 3 cut(s) 200, 537, 613
Hpy188III TCNNGA 5 cut(s) 41, 69, 286, 509, 743
Hpy8I GTNNAC 5 cut(s) 135, 347, 988, 1066, 1079
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 2 cut(s) 86, 619
HpyCH4III ACNGT 3 cut(s) 344, 859, 985
HpyCH4IV ACGT 3 cut(s) 277, 929, 1044
HpyCH4V TGCA 9 cut(s) 63, 258, 272, 374, 479, 572, 602, 981, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 569, 578, 599, 782, 884, 1031
HpyF3I CTNAG 4 cut(s) 465, 582, 1073, 1209
HpySE526I ACGT 3 cut(s) 277, 929, 1044
Hsp92II CATG 5 cut(s) 219, 729, 805, 926, 1072
KpnI GGTACC 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 232, 363, 1170
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 4 cut(s) 694, 752, 1031, 1119
Lsp1109I GCAGC 4 cut(s) 386, 575, 673, 794
LweI GCATC 4 cut(s) 259, 466, 581, 611
MaeI CTAG 4 cut(s) 54, 470, 908, 956
MaeII ACGT 3 cut(s) 277, 929, 1044
MaeIII GTNAC 3 cut(s) 665, 676, 1040
MalI GATC 3 cut(s) 234, 365, 1172
MboI GATC 3 cut(s) 232, 363, 1170
MfeI CAATTG 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 1109
MluCI AATT 6 cut(s) 44, 236, 544, 637, 756, 816
MluNI TGGCCA 1 cut(s) 1109
MlyI GAGTC 4 cut(s) 623, 983, 1195, 1199
MnlI CCTC 7 cut(s) 424, 474, 505, 707, 742, 1003, 1192
Mox20I TGGCCA 1 cut(s) 1109
MscI TGGCCA 1 cut(s) 1109
MseI TTAA 3 cut(s) 240, 315, 1194
MslI CAYNNNNRTG 2 cut(s) 454, 921
Msp20I TGGCCA 1 cut(s) 1109
MspI CCGG 2 cut(s) 837, 1038
MspR9I CCNGG 1 cut(s) 1118
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 1118
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 6 cut(s) 569, 578, 599, 782, 884, 1031
NdeI CATATG 2 cut(s) 778, 1021
NdeII GATC 3 cut(s) 232, 363, 1170
NheI GCTAGC 2 cut(s) 469, 907
NlaIII CATG 5 cut(s) 219, 729, 805, 926, 1072
NlaIV GGNNCC 2 cut(s) 462, 847
NspI RCATGY 1 cut(s) 1072
NspV TTCGAA 1 cut(s) 623
PaeR7I CTCGAG 2 cut(s) 509, 1183
PciSI GCTCTTC 1 cut(s) 67
PfeI GAWTC 5 cut(s) 37, 184, 212, 394, 840
Pfl23II CGTACG 1 cut(s) 930
PkrI GCNGC 5 cut(s) 122, 376, 565, 688, 809
PleI GAGTC 4 cut(s) 622, 983, 1194, 1199
PpsI GAGTC 4 cut(s) 622, 983, 1194, 1199
Ppu21I YACGTR 2 cut(s) 278, 930
Psp1406I AACGTT 1 cut(s) 1044
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PspLI CGTACG 1 cut(s) 930
PspN4I GGNNCC 2 cut(s) 462, 847
PspPI GGNCC 2 cut(s) 332, 499
PspXI VCTCGAGB 1 cut(s) 1183
PstI CTGCAG 1 cut(s) 376
RsaI GTAC 2 cut(s) 847, 932
RsaNI GTAC 2 cut(s) 846, 931
RseI CAYNNNNRTG 2 cut(s) 454, 921
Rsr2I CGGWCCG 1 cut(s) 499
RsrII CGGWCCG 1 cut(s) 499
SalI GTCGAC 1 cut(s) 986
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 3 cut(s) 240, 315, 1194
SatI GCNGC 5 cut(s) 121, 375, 564, 687, 808
Sau3AI GATC 3 cut(s) 232, 363, 1170
Sau96I GGNCC 2 cut(s) 332, 499
SchI GAGTC 4 cut(s) 623, 983, 1195, 1199
ScrFI CCNGG 1 cut(s) 1118
SfaNI GCATC 4 cut(s) 259, 466, 581, 611
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 2 cut(s) 509, 1183
SfuI TTCGAA 1 cut(s) 623
SinI GGWCC 2 cut(s) 332, 499
SlaI CTCGAG 2 cut(s) 509, 1183
SmiMI CAYNNNNRTG 2 cut(s) 454, 921
SmlI CTYRAG 2 cut(s) 509, 1183
SmoI CTYRAG 2 cut(s) 509, 1183
Sse9I AATT 6 cut(s) 44, 236, 544, 637, 756, 816
SsiI CCGC 3 cut(s) 121, 497, 502
SspI AATATT 1 cut(s) 952
SspMI CTAG 4 cut(s) 54, 470, 908, 956
StyD4I CCNGG 1 cut(s) 1116
StyI CCWWGG 2 cut(s) 690, 1026
TaaI ACNGT 3 cut(s) 344, 859, 985
TaiI ACGT 3 cut(s) 280, 932, 1047
TaqI TCGA 5 cut(s) 510, 623, 712, 987, 1184
TasI AATT 6 cut(s) 44, 236, 544, 637, 756, 816
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 5 cut(s) 37, 184, 212, 394, 840
Tru1I TTAA 3 cut(s) 240, 315, 1194
Tru9I TTAA 3 cut(s) 240, 315, 1194
TscAI CASTG 1 cut(s) 1057
TseI GCWGC 4 cut(s) 374, 563, 686, 807
TspDTI ATGAA 4 cut(s) 276, 386, 905, 1123
TspRI CASTG 1 cut(s) 1057
VpaK11BI GGWCC 2 cut(s) 332, 499
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 2 cut(s) 44, 816
XceI RCATGY 1 cut(s) 1072
XcmI CCANNNNNNNNNTGG 2 cut(s) 1102, 1117
XhoI CTCGAG 2 cut(s) 509, 1183
XmiI GTMKAC 4 cut(s) 134, 346, 987, 1065
XspI CTAG 4 cut(s) 54, 470, 908, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.