Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

778865 .. 779931

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1006800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAGCTCTTGAAGAAGGTGCATAATCCAAAATATAAGCTCAAACTTGAGAAAATAGGAATCAGCACAGTGGATTCATCAGTATCAGGTCTTTGGGGTTGCCCGTATGCTAAAGGAGGTTCCGGAAATGTTGCCACGGAAGATGTTGTGTACATGCTGAATGGACTTGGAGTGAAGACCAATGTAGATGTTAAAAAACTCATGTTGGCTTGGGACTTTATCAGTAAGCACTTGGGGCGCTCATCTGGTTCAAAGACAGCAGTTGCCTTGGGTAAAGACACAGCTCCTGCCTCGAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

101

Amino Acids

10.65

Weight (kDa)

9.64

Isoelectric Point (pI)

21.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	19 - 72	1.2e-06	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	122
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	13, 252
AluBI	AGCT	4 cut(s)	7, 40, 284, 298
AluI	AGCT	4 cut(s)	7, 40, 284, 298
Alw21I	GWGCWC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	135, 267
BsaWI	WCCGGW	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	135, 267
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	135, 267
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	154, 202
CviJI	RGCY	5 cut(s)	7, 40, 209, 284, 298
CviKI_1	RGCY	5 cut(s)	7, 40, 209, 284, 298
CviQI	GTAC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	157, 205
FaiI	YATR	6 cut(s)	24, 36, 108, 155, 203, 301
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	153, 201
FriOI	GRGCYC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	241
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	157, 205
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	60, 74
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	10, 123
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	157, 205
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	4, 289
LpnPI	CCDG	3 cut(s)	72, 136, 231
MboII	GAAGA	3 cut(s)	25, 152, 187
MhlI	GDGCHC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	110, 301
MroI	TCCGGA	1 cut(s)	122
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	157, 205
NlaIV	GGNNCC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	60, 74
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	9, 21, 42, 91, 121, 286, 300
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	293
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	60, 74
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	75
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.