Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000293.1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

53870 .. 57841

Gene Structure 3972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000293.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgtattacgcagttgcacgcgggggaggcctcgagccttgctatttgtcaagtcgtcgtcatttcacctcttcaatcaataagccggttttaggaaacattccagagtttgtaaagatagtagaagtgggtccgagagatggactccagaatgagaagcagattgttcctactgacgtcaaggttcggttgatccaaatgctggtttcctccggcctcactgttgttgaggctaccagttttgtctctcccaaatgggttccgcagctggcagatgcaaaggatgtaatggaggcgattcggaatgtggggggtgctagatttcccgttttaacccctaatctcaaaggtttcgaggctgctgtcgctgctggtgcaaaggaagttgccatctttgcttcagcttctgagtctttttcaaaatcaaatataaactgcagtattgaagacagtctcagacgttaccgtgatgttgctagtgccgctagaaagctttctattcctgttcgtggatatatatcatgtgttgtcggctgtccaacggaaggagctgtacccccatctcaagtagcatatgtggccaaagaactgtatgatatgggttgctttgacatttctcttggtgatacaattggtgttggtactccaggtaccgtcattccaatgcttgaagaggtgattgatgtggtccccactgaaaaccttgctgtccatttccatgacacttatggccaagctctttcaaacatactagtatctcttcagatgggcatcagcacagtggattcatcagtttctggtcttgggggttgtccatatgctaaaggtgcttctggcaatgttgccactgaggatgttgtgtacatgcttaatggacttggagtgaagaccaacatagatcttcaaaagctcatgttggctggggactttatctgcaagcacttggggcgctcacctggttcaaagacagctgttgccttgagtaaagtccctgctcagacctctaagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

337

Amino Acids

35.63

Weight (kDa)

6.89

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
Acc65I	GGTACC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	650
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccII	CGCG	1 cut(s)	21
AciI	CCGC	3 cut(s)	21, 263, 483
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	2 cut(s)	579, 730
AcuI	CTGAAG	2 cut(s)	384, 746
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	4 cut(s)	555, 643, 652, 863
AfiI	CCNNNNNNNGG	5 cut(s)	92, 140, 202, 509, 545
AgsI	TTSAA	7 cut(s)	75, 420, 446, 671, 744, 905, 963
AhlI	ACTAGT	1 cut(s)	751
AjnI	CCWGG	2 cut(s)	646, 955
AluBI	AGCT	8 cut(s)	268, 404, 493, 551, 737, 910, 971, 1009
AluI	AGCT	8 cut(s)	268, 404, 493, 551, 737, 910, 971, 1009
Alw26I	GTCTC	2 cut(s)	250, 458
AlwI	GGATC	1 cut(s)	187
AlwNI	CAGNNNCTG	2 cut(s)	407, 797
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	4 cut(s)	28, 214, 579, 730
ApeKI	GCWGC	3 cut(s)	265, 359, 368
Asp700I	GAANNNNTTC	1 cut(s)	493
Asp718I	GGTACC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	951
AspS9I	GGNCC	2 cut(s)	131, 688
AsuHPI	GGTGA	4 cut(s)	58, 635, 688, 945
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	131, 688
BalI	TGGCCA	2 cut(s)	581, 732
BanI	GGYRCC	1 cut(s)	650
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
BbsI	GAAGAC	2 cut(s)	453, 893
BbvI	GCAGC	3 cut(s)	277, 346, 355
BccI	CCATC	4 cut(s)	134, 398, 568, 760
BciT130I	CCWGG	2 cut(s)	648, 957
BcoDI	GTCTC	2 cut(s)	250, 458
BcuI	ACTAGT	1 cut(s)	751
BfaI	CTAG	4 cut(s)	318, 477, 486, 752
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	952
BglII	AGATCT	1 cut(s)	898
BisI	GCNGC	4 cut(s)	266, 360, 369, 483
BlsI	GCNGC	4 cut(s)	267, 361, 370, 484
Bme1390I	CCNGG	2 cut(s)	648, 957
Bme18I	GGWCC	2 cut(s)	131, 688
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	131, 688
BmiI	GGNNCC	4 cut(s)	132, 261, 652, 690
BmrFI	CCNGG	2 cut(s)	648, 957
BmsI	GCATC	2 cut(s)	265, 780
BpiI	GAAGAC	2 cut(s)	453, 893
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpmI	CTGGAG	2 cut(s)	131, 630
BpuEI	CTTGAG	2 cut(s)	549, 1000
BsaBI	GATNNNNATC	2 cut(s)	517, 770
BsaHI	GRCGYC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 140, 202, 509, 545
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	844
Bse8I	GATNNNNATC	2 cut(s)	517, 770
BseBI	CCWGG	2 cut(s)	648, 957
BseGI	GGATG	2 cut(s)	289, 859
BseJI	GATNNNNATC	2 cut(s)	517, 770
BseLI	CCNNNNNNNGG	5 cut(s)	92, 140, 202, 509, 545
BseMI	GCAATG	1 cut(s)	844
BseMII	CTCAG	4 cut(s)	399, 469, 840, 1010
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	277, 346, 355
BseYI	CCCAGC	1 cut(s)	920
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	4 cut(s)	30, 216, 581, 732
BshNI	GGYRCC	1 cut(s)	650
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	86, 213
BslFI	GGGAC	3 cut(s)	674, 938, 974
BslI	CCNNNNNNNGG	5 cut(s)	92, 140, 202, 509, 545
BsmAI	GTCTC	2 cut(s)	250, 458
BsmFI	GGGAC	3 cut(s)	674, 938, 974
BsnI	GGCC	4 cut(s)	30, 216, 581, 732
BsoBI	CYCGRG	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	2 cut(s)	192, 898
BspACI	CCGC	3 cut(s)	21, 263, 483
BspANI	GGCC	4 cut(s)	30, 216, 581, 732
BspCNI	CTCAG	4 cut(s)	400, 468, 841, 1009
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	132, 261, 652, 690
BspMAI	CTGCAG	1 cut(s)	440
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	85
BssMI	GATC	2 cut(s)	192, 898
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	648, 957
Bst4CI	ACNGT	6 cut(s)	223, 452, 467, 591, 655, 781
Bst6I	CTCTTC	3 cut(s)	76, 666, 765
BstACI	GRCGYC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	861
BstC8I	GCNNGC	3 cut(s)	19, 270, 938
BstDEI	CTNAG	5 cut(s)	408, 455, 849, 996, 1005
BstF5I	GGATG	2 cut(s)	289, 859
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	952
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	2 cut(s)	195, 901
BstMAI	GTCTC	2 cut(s)	250, 458
BstMBI	GATC	2 cut(s)	192, 898
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 365, 368, 374, 395, 482, 578, 827, 946
BstNI	CCWGG	2 cut(s)	648, 957
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	646, 955
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	277, 346, 355
BstV2I	GAAGAC	2 cut(s)	453, 893
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	30, 216, 581, 732
BtsCI	GGATG	2 cut(s)	289, 859
BtsIMutI	CAGTG	4 cut(s)	219, 693, 786, 846
Cac8I	GCNNGC	3 cut(s)	19, 270, 938
CaiI	CAGNNNCTG	2 cut(s)	407, 797
CfoI	GCGC	1 cut(s)	951
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	131, 688
CsiI	ACCWGGT	1 cut(s)	955
Csp6I	GTAC	4 cut(s)	554, 642, 651, 862
CviAII	CATG	4 cut(s)	522, 719, 865, 913
CviQI	GTAC	4 cut(s)	554, 642, 651, 862
DdeI	CTNAG	5 cut(s)	408, 455, 849, 996, 1005
DpnI	GATC	2 cut(s)	194, 900
DpnII	GATC	2 cut(s)	192, 898
EaeI	YGGCCR	2 cut(s)	579, 730
Eam1104I	CTCTTC	3 cut(s)	76, 666, 765
EarI	CTCTTC	3 cut(s)	76, 666, 765
Eco147I	AGGCCT	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	131, 688
Eco57I	CTGAAG	2 cut(s)	384, 746
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	646, 955
FaeI	CATG	4 cut(s)	525, 722, 868, 916
FaqI	GGGAC	3 cut(s)	674, 938, 974
FatI	CATG	4 cut(s)	521, 718, 864, 912
FauI	CCCGC	1 cut(s)	14
FauNDI	CATATG	2 cut(s)	574, 817
Fnu4HI	GCNGC	4 cut(s)	266, 360, 369, 483
FokI	GGATG	2 cut(s)	296, 866
Fsp4HI	GCNGC	4 cut(s)	266, 360, 369, 483
FspBI	CTAG	4 cut(s)	318, 477, 486, 752
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	4 cut(s)	266, 360, 369, 483
GsaI	CCCAGC	1 cut(s)	924
GsuI	CTGGAG	2 cut(s)	131, 630
HaeII	RGCGCY	1 cut(s)	952
HaeIII	GGCC	4 cut(s)	30, 216, 581, 732
HapII	CCGG	2 cut(s)	86, 213
HhaI	GCGC	1 cut(s)	951
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	525, 722, 868, 916
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HindIII	AAGCTT	2 cut(s)	491, 1007
HinfI	GANTC	4 cut(s)	144, 298, 410, 785
HpaII	CCGG	2 cut(s)	86, 213
HphI	GGTGA	4 cut(s)	58, 635, 688, 945
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	6 cut(s)	135, 303, 409, 458, 765, 999
Hpy188III	TCNNGA	2 cut(s)	104, 148
Hpy8I	GTNNAC	1 cut(s)	862
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	6 cut(s)	223, 452, 467, 591, 655, 781
HpyCH4IV	ACGT	2 cut(s)	177, 460
HpyCH4V	TGCA	5 cut(s)	17, 278, 377, 438, 936
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 365, 368, 374, 395, 482, 578, 827, 946
HpyF3I	CTNAG	5 cut(s)	408, 455, 849, 996, 1005
HpySE526I	ACGT	2 cut(s)	177, 460
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	525, 722, 868, 916
HspAI	GCGC	1 cut(s)	949
KpnI	GGTACC	1 cut(s)	654
Kzo9I	GATC	2 cut(s)	192, 898
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	3 cut(s)	277, 346, 355
LweI	GCATC	2 cut(s)	265, 780
MabI	ACCWGGT	1 cut(s)	955
MaeI	CTAG	4 cut(s)	318, 477, 486, 752
MaeII	ACGT	2 cut(s)	177, 460
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	194, 900
MboI	GATC	2 cut(s)	192, 898
MboII	GAAGA	6 cut(s)	63, 458, 683, 752, 893, 898
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	898
MlsI	TGGCCA	2 cut(s)	581, 732
MluCI	AATT	1 cut(s)	630
MluNI	TGGCCA	2 cut(s)	581, 732
MlyI	GAGTC	2 cut(s)	138, 419
MmeI	TCCRAC	1 cut(s)	563
Mox20I	TGGCCA	2 cut(s)	581, 732
MroXI	GAANNNNTTC	1 cut(s)	493
MscI	TGGCCA	2 cut(s)	581, 732
MseI	TTAA	3 cut(s)	332, 870, 1012
MslI	CAYNNNNRTG	2 cut(s)	662, 717
Msp20I	TGGCCA	2 cut(s)	581, 732
MspA1I	CMGCKG	2 cut(s)	268, 971
MspI	CCGG	2 cut(s)	86, 213
MspR9I	CCNGG	2 cut(s)	648, 957
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	2 cut(s)	648, 957
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	9 cut(s)	27, 365, 368, 374, 395, 482, 578, 827, 946
NdeI	CATATG	2 cut(s)	574, 817
NdeII	GATC	2 cut(s)	192, 898
NlaIII	CATG	4 cut(s)	525, 722, 868, 916
NlaIV	GGNNCC	4 cut(s)	132, 261, 652, 690
NspI	RCATGY	1 cut(s)	868
PaeR7I	CTCGAG	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	298, 785
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	267, 361, 370, 484
PleI	GAGTC	2 cut(s)	138, 418
PpsI	GAGTC	2 cut(s)	138, 418
Psp6I	CCWGG	2 cut(s)	646, 955
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	2 cut(s)	646, 955
PspN4I	GGNNCC	4 cut(s)	132, 261, 652, 690
PspPI	GGNCC	2 cut(s)	131, 688
PspXI	VCTCGAGB	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	440
PstNI	CAGNNNCTG	2 cut(s)	407, 797
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	2 cut(s)	268, 971
RsaI	GTAC	4 cut(s)	555, 643, 652, 863
RsaNI	GTAC	4 cut(s)	554, 642, 651, 862
RseI	CAYNNNNRTG	2 cut(s)	662, 717
SaqAI	TTAA	3 cut(s)	332, 870, 1012
SatI	GCNGC	4 cut(s)	266, 360, 369, 483
Sau3AI	GATC	2 cut(s)	192, 898
Sau96I	GGNCC	2 cut(s)	131, 688
SchI	GAGTC	2 cut(s)	138, 419
ScrFI	CCNGG	2 cut(s)	648, 957
SexAI	ACCWGGT	1 cut(s)	955
SfaNI	GCATC	2 cut(s)	265, 780
SfcI	CTRYAG	1 cut(s)	436
Sfr274I	CTCGAG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	131, 688
SlaI	CTCGAG	1 cut(s)	32
SmiMI	CAYNNNNRTG	2 cut(s)	662, 717
SmlI	CTYRAG	3 cut(s)	32, 564, 979
SmoI	CTYRAG	3 cut(s)	32, 564, 979
SpeI	ACTAGT	1 cut(s)	751
Sse9I	AATT	1 cut(s)	630
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	3 cut(s)	21, 263, 483
SspMI	CTAG	4 cut(s)	318, 477, 486, 752
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	646, 955
TaaI	ACNGT	6 cut(s)	223, 452, 467, 591, 655, 781
TaiI	ACGT	2 cut(s)	180, 463
TaqI	TCGA	2 cut(s)	33, 354
TasI	AATT	1 cut(s)	630
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	298, 785
Tru1I	TTAA	3 cut(s)	332, 870, 1012
Tru9I	TTAA	3 cut(s)	332, 870, 1012
TscAI	CASTG	4 cut(s)	226, 700, 786, 853
TseI	GCWGC	3 cut(s)	265, 359, 368
TspDTI	ATGAA	1 cut(s)	777
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	4 cut(s)	226, 700, 786, 853
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	131, 688
XceI	RCATGY	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	4 cut(s)	318, 477, 486, 752
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.