Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

36841768 .. 36847817

Gene Structure 6050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG332300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGGAGGAATGTGTATTACAGGAATGGAGCAGTTGCAGGGGCCCTGGACGCTTCCTCTTTGTCAACTCATCATATAAGCTCTTCAAGCAATAAGCCGGCATTAGGAAACATTCCAGAGTTTGTCAAGATAGTAGAAGTCGGTCCCAGGGATGGACTGCAGAATGAGAAGCAGATTATTCCTACTGATGTAAAGGTTCGGTTCATAGAAATGCTTGTTTCGTCCGGACTCACTGTTGTTGAGGCTACAAGTTTTGTCTCTCCCAAATGGATTCCACAGCTGGCAGATGCAAAGGATGTAATGGAAGCGATTCGGAATATGAGAGGTGCTAAAATTCCTGTTTTAACTCCTAATCTCAAAGGTTTTGAGGCGGCTGTTGCTGCTGACAGTCTCAGACGTTACCGTGATGTTGCTGTTGCTGCAAAAAAGCTTTCTATTCCAGTTCGAGGATATATATCATGTGTTGTGGGGTGTCCAATAGAAGGAGCTGTAGCCCCATCTCAAGTAGCATATATGGCCAAAGAACTTCTTGATATGGGTTGCTTTGACATTTCTCTTGGCGATACAATTGGTGTTGGTACTCCAGTTGAACCCTGCAGATGTTGCGGAGTTTTAGCACGACACTTATGGCCAAGTTCTTTCAAATATACTCGTATCTCTTCAGGTAACCACGCTCTGCATCTTGATTTTAGCATGATGGGCATCAACACAGTGGATTCATCAGTCTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGAGCTTCTGGCAATGTTGCCACTGAGGATGTTGCGTACATGCTTAATGGACTTGGAGTGAAGACCAACATAGGTCTTCAAAAGCTCATGGTGGCTGGGGACTTTATCTGCAAGCACTTGGGGCGCTCATCTGGTTCAAAGACAGCGGTTGCCCTGACTAAAGCTCACAGCTCATGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

312

Amino Acids

33.06

Weight (kDa)

9.01

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	42 - 129	2.6e-09	HMGL-like
HMGL-like	PF00682	133 - 288	2e-14	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	3 cut(s)	371, 606, 902
AcoI	YGGCCR	2 cut(s)	516, 629
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	580, 794
AfiI	CCNNNNNNNGG	4 cut(s)	104, 152, 446, 482
AgsI	TTSAA	5 cut(s)	87, 590, 643, 836, 894
AjnI	CCWGG	2 cut(s)	45, 146
AluBI	AGCT	8 cut(s)	81, 280, 430, 488, 761, 841, 920, 927
AluI	AGCT	8 cut(s)	81, 280, 430, 488, 761, 841, 920, 927
Alw26I	GTCTC	3 cut(s)	262, 395, 730
AlwNI	CAGNNNCTG	1 cut(s)	728
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	3 cut(s)	42, 516, 629
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	380, 419
ApoI	RAATTY	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	3 cut(s)	42, 43, 143
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	46
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BalI	TGGCCA	2 cut(s)	518, 631
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	824, 824
BbvI	GCAGC	2 cut(s)	367, 406
BccI	CCATC	3 cut(s)	146, 505, 691
BciT130I	CCWGG	2 cut(s)	47, 148
BcoDI	GTCTC	3 cut(s)	262, 395, 730
BfmI	CTRYAG	3 cut(s)	158, 489, 595
BfoI	RGCGCY	1 cut(s)	883
BisI	GCNGC	3 cut(s)	372, 381, 420
BlsI	GCNGC	3 cut(s)	373, 382, 421
Bme1390I	CCNGG	2 cut(s)	47, 148
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	42, 43, 143
BmiI	GGNNCC	3 cut(s)	43, 44, 145
BmrFI	CCNGG	2 cut(s)	47, 148
BmsI	GCATC	3 cut(s)	277, 688, 711
BpiI	GAAGAC	2 cut(s)	824, 824
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	486
BsaBI	GATNNNNATC	2 cut(s)	454, 701
BsaJI	CCNNGG	3 cut(s)	45, 146, 147
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 152, 446, 482
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	440, 584
Bse3DI	GCAATG	1 cut(s)	775
Bse8I	GATNNNNATC	2 cut(s)	454, 701
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	47, 148
BseDI	CCNNGG	3 cut(s)	45, 146, 147
BseGI	GGATG	3 cut(s)	157, 301, 790
BseJI	GATNNNNATC	2 cut(s)	454, 701
BseLI	CCNNNNNNNGG	4 cut(s)	104, 152, 446, 482
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	2 cut(s)	406, 771
BseNI	ACTGG	2 cut(s)	440, 584
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	367, 406
BseYI	CCCAGC	1 cut(s)	851
BshFI	GGCC	3 cut(s)	44, 518, 631
BsiSI	CCGG	2 cut(s)	98, 225
BslFI	GGGAC	2 cut(s)	129, 869
BslI	CCNNNNNNNGG	4 cut(s)	104, 152, 446, 482
BsmAI	GTCTC	3 cut(s)	262, 395, 730
BsmFI	GGGAC	2 cut(s)	129, 869
BsnI	GGCC	3 cut(s)	44, 518, 631
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	224
BspACI	CCGC	3 cut(s)	371, 606, 902
BspANI	GGCC	3 cut(s)	44, 518, 631
BspCNI	CTCAG	2 cut(s)	405, 772
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	43, 44, 145
BspMAI	CTGCAG	2 cut(s)	162, 599
BspQI	GCTCTTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	440, 584
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	45, 146, 147
Bst2UI	CCWGG	2 cut(s)	47, 148
Bst4CI	ACNGT	4 cut(s)	235, 389, 404, 712
Bst6I	CTCTTC	2 cut(s)	88, 664
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	3 cut(s)	99, 282, 869
BstDEI	CTNAG	2 cut(s)	392, 780
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	157, 301, 790
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	882
BstMAI	GTCTC	3 cut(s)	262, 395, 730
BstNI	CCWGG	2 cut(s)	47, 148
BstNSI	RCATGY	1 cut(s)	799
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	45, 146
BstSFI	CTRYAG	3 cut(s)	158, 489, 595
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	367, 406
BstV2I	GAAGAC	2 cut(s)	824, 824
BsuRI	GGCC	3 cut(s)	44, 518, 631
BtsCI	GGATG	3 cut(s)	157, 301, 790
BtsIMutI	CAGTG	3 cut(s)	231, 717, 777
Cac8I	GCNNGC	3 cut(s)	99, 282, 869
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	882
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	42, 43, 143
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	579, 793
CviAII	CATG	5 cut(s)	459, 694, 796, 844, 930
CviQI	GTAC	2 cut(s)	579, 793
DdeI	CTNAG	2 cut(s)	392, 780
EaeI	YGGCCR	2 cut(s)	516, 629
Eam1104I	CTCTTC	2 cut(s)	88, 664
EarI	CTCTTC	2 cut(s)	88, 664
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	665
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	2 cut(s)	45, 146
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	5 cut(s)	462, 697, 799, 847, 933
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	2 cut(s)	129, 869
FatI	CATG	5 cut(s)	458, 693, 795, 843, 929
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	3 cut(s)	372, 381, 420
FokI	GGATG	3 cut(s)	164, 308, 797
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	372, 381, 420
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	3 cut(s)	372, 381, 420
GsaI	CCCAGC	1 cut(s)	855
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	3 cut(s)	44, 518, 631
HapII	CCGG	2 cut(s)	98, 225
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	882
Hin1II	CATG	5 cut(s)	462, 697, 799, 847, 933
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	4 cut(s)	228, 271, 310, 716
HpaII	CCGG	2 cut(s)	98, 225
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	315, 395
Hpy188III	TCNNGA	5 cut(s)	116, 127, 225, 530, 683
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	4 cut(s)	235, 389, 404, 712
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	7 cut(s)	38, 160, 290, 422, 597, 679, 867
HpyF3I	CTNAG	2 cut(s)	392, 780
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	462, 697, 799, 847, 933
HspAI	GCGC	1 cut(s)	880
Kpn2I	TCCGGA	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	29, 485, 758
Lsp1109I	GCAGC	2 cut(s)	367, 406
LweI	GCATC	3 cut(s)	277, 688, 711
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	398, 665
MboII	GAAGA	4 cut(s)	75, 651, 824, 829
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	2 cut(s)	518, 631
MluCI	AATT	2 cut(s)	333, 567
MluNI	TGGCCA	2 cut(s)	518, 631
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	67, 235, 317, 361, 440, 775
Mox20I	TGGCCA	2 cut(s)	518, 631
MroI	TCCGGA	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	2 cut(s)	518, 631
MseI	TTAA	3 cut(s)	344, 801, 937
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	2 cut(s)	518, 631
MspA1I	CMGCKG	2 cut(s)	280, 902
MspI	CCGG	2 cut(s)	98, 225
MspR9I	CCNGG	2 cut(s)	47, 148
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	2 cut(s)	47, 148
NaeI	GCCGGC	1 cut(s)	99
NdeI	CATATG	1 cut(s)	748
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	462, 697, 799, 847, 933
NlaIV	GGNNCC	3 cut(s)	43, 44, 145
NspI	RCATGY	1 cut(s)	799
PasI	CCCWGGG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	271, 310, 716
PkrI	GCNGC	3 cut(s)	373, 382, 421
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	45, 146
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	851
PspGI	CCWGG	2 cut(s)	45, 146
PspN4I	GGNNCC	3 cut(s)	43, 44, 145
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	42, 43, 143
PstI	CTGCAG	2 cut(s)	162, 599
PstNI	CAGNNNCTG	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	580, 794
RsaNI	GTAC	2 cut(s)	579, 793
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	344, 801, 937
SatI	GCNGC	3 cut(s)	372, 381, 420
Sau96I	GGNCC	3 cut(s)	42, 43, 143
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	47, 148
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	3 cut(s)	277, 688, 711
SfcI	CTRYAG	3 cut(s)	158, 489, 595
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	2 cut(s)	333, 567
SsiI	CCGC	3 cut(s)	371, 606, 902
StyD4I	CCNGG	2 cut(s)	45, 146
TaaI	ACNGT	4 cut(s)	235, 389, 404, 712
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	445
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	333, 567
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	3 cut(s)	271, 310, 716
Tru1I	TTAA	3 cut(s)	344, 801, 937
Tru9I	TTAA	3 cut(s)	344, 801, 937
TscAI	CASTG	3 cut(s)	238, 717, 784
TseI	GCWGC	2 cut(s)	380, 419
TspDTI	ATGAA	2 cut(s)	193, 708
TspRI	CASTG	3 cut(s)	238, 717, 784
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.