Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

12758421 .. 12767031

Gene Structure 8611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGTGTGTTCTGGGTTTGAATGATGAAGTATCGTCGTTCAGGGTTGAAGAGGTTATTGATGTGGTCCCCACTGAGAAGCTTGCTGTCCATTTCCACGACACTTATGGCCAAGCTCTTTCAAATATACTAGTATCTCTTCAGATGGGCATCAGCACAGTGGATTCATCAGTCTCGGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCTTCTGGCAATGTTGCCACCGAGGATGTTGTGTACATGCTTAATGGACTTGGAGCGAAGACCAACATAGATCTTCAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTGGGTCGCTCATCTGGTTCAAAGACAGCTGCTGCCTTGACTAAAGGCAATGATAATTTCTTCACGGGCTCTACAAATGTGTGCCCAATGACCGGACACCGTACATCGGGAACATACATCTCCGTGCTCAAACCGCACCGATTGAGGCGCTACGAAAGCGTTATTTGGATGGCTCTTAGTGTTGATGGCGCCACCTACAAGGCCGGAGGCGTTGCCTCTCTCTCTCTCTTTCCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

186

Amino Acids

19.68

Weight (kDa)

6.5

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	15 - 104	7.3e-20	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	2 cut(s)	242, 424
AfiI	CCNNNNNNNGG	2 cut(s)	413, 427
AgsI	TTSAA	5 cut(s)	22, 50, 123, 284, 342
AhlI	ACTAGT	1 cut(s)	130
AluBI	AGCT	4 cut(s)	82, 116, 289, 350
AluI	AGCT	4 cut(s)	82, 116, 289, 350
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	109, 522
ApeKI	GCWGC	2 cut(s)	350, 353
AspLEI	GCGC	2 cut(s)	471, 512
AspS9I	GGNCC	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	337, 340
BccI	CCATC	3 cut(s)	139, 484, 500
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BcoDI	GTCTC	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	1 cut(s)	131
BfoI	RGCGCY	2 cut(s)	472, 513
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	2 cut(s)	351, 354
BlsI	GCNGC	2 cut(s)	352, 355
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	69, 511
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 427
Bse3DI	GCAATG	2 cut(s)	223, 376
Bse8I	GATNNNNATC	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	238, 495
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	413, 427
BseMI	GCAATG	2 cut(s)	223, 376
BseMII	CTCAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	337, 340
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	2 cut(s)	111, 524
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	414, 525
BslFI	GGGAC	2 cut(s)	53, 317
BslI	CCNNNNNNNGG	2 cut(s)	413, 427
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	53, 317
BsnI	GGCC	2 cut(s)	111, 524
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	3 cut(s)	392, 407, 450
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	111, 524
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	69, 511
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	223, 376
BsrGI	TGTACA	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	160, 422
Bst6I	CTCTTC	2 cut(s)	45, 144
BstACI	GRCGYC	1 cut(s)	510
BstAUI	TGTACA	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	84, 317
BstDEI	CTNAG	2 cut(s)	75, 497
BstF5I	GGATG	2 cut(s)	238, 495
BstH2I	RGCGCY	2 cut(s)	472, 513
BstHHI	GCGC	2 cut(s)	471, 512
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 454, 477
BstNSI	RCATGY	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	337, 340
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	111, 524
BtsCI	GGATG	2 cut(s)	238, 495
BtsIMutI	CAGTG	2 cut(s)	72, 165
Cac8I	GCNNGC	2 cut(s)	84, 317
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	2 cut(s)	471, 512
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	241, 423
CviAII	CATG	2 cut(s)	244, 292
CviJI	RGCY	9 cut(s)	82, 111, 116, 289, 299, 350, 390, 494, 524
CviKI_1	RGCY	9 cut(s)	82, 111, 116, 289, 299, 350, 390, 494, 524
CviQI	GTAC	2 cut(s)	241, 423
DdeI	CTNAG	2 cut(s)	75, 497
DinI	GGCGCC	1 cut(s)	511
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	45, 144
EarI	CTCTTC	2 cut(s)	45, 144
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	392
EgeI	GGCGCC	1 cut(s)	511
EheI	GGCGCC	1 cut(s)	511
FaeI	CATG	2 cut(s)	247, 295
FaiI	YATR	8 cut(s)	108, 128, 196, 198, 245, 275, 293, 436
FaqI	GGGAC	2 cut(s)	53, 317
FatI	CATG	2 cut(s)	243, 291
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	351, 354
FokI	GGATG	2 cut(s)	245, 502
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	351, 354
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	2 cut(s)	470, 511
GluI	GCNGC	2 cut(s)	351, 354
GsaI	CCCAGC	1 cut(s)	303
HaeII	RGCGCY	2 cut(s)	472, 513
HaeIII	GGCC	2 cut(s)	111, 524
HapII	CCGG	2 cut(s)	414, 525
HhaI	GCGC	2 cut(s)	471, 512
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	2 cut(s)	247, 295
Hin6I	GCGC	2 cut(s)	469, 510
HinP1I	GCGC	2 cut(s)	469, 510
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	414, 525
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	429
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	160, 422
HpyCH4V	TGCA	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 454, 477
HpyF3I	CTNAG	2 cut(s)	75, 497
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	247, 295
HspAI	GCGC	2 cut(s)	469, 510
KasI	GGCGCC	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	6 cut(s)	28, 198, 285, 321, 427, 538
Lsp1109I	GCAGC	2 cut(s)	337, 340
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	131
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	62, 131, 272, 277, 373
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	392, 407, 450
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	376
MluNI	TGGCCA	1 cut(s)	111
Mly113I	GGCGCC	1 cut(s)	510
MnlI	CCTC	5 cut(s)	46, 223, 459, 521, 547
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	414, 525
MwoI	GCNNNNNNNGC	3 cut(s)	206, 454, 477
NarI	GGCGCC	1 cut(s)	510
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	247, 295
NlaIV	GGNNCC	2 cut(s)	69, 511
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	352, 355
PluTI	GGCGCC	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	69, 511
PspPI	GGNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	242, 424
RsaNI	GTAC	2 cut(s)	241, 423
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	351, 354
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	392, 407, 450
SetI	ASST	7 cut(s)	57, 84, 118, 208, 291, 352, 518
SfaNI	GCATC	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	1 cut(s)	455
SspDI	GGCGCC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	160, 422
TasI	AATT	1 cut(s)	376
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	79, 165
TseI	GCWGC	2 cut(s)	350, 353
TspDTI	ATGAA	2 cut(s)	42, 156
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	2 cut(s)	79, 165
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.