Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

23403274 .. 23406856

Gene Structure 3583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0248700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCTTCCACGGAGGGTCTGGTGCCCATGACCAGGGCTTTTCTCACTTCTTATTACGACACCTACAAATTCCTTCCTATCTCCGATGACATCCCCCGCCTCTCCTCCGAGATTCGATCCCTCACCGCCGATTTGCTCTCCAACTCTCTGGCCACTCCAGGTACTCAATCATATTCTCCTTCAATGGTGAATATTGTTACTAGATTCCATGTAGTGTTTGGTATTTATGGAGTTCTTGTTGGGTGTTCTTGGAAAGTGAACTGTCAAATGGCTTGCCCTTATGGGGAAGAGCCAATTTTTGGTAGACTATCAATTTTTGAGTCGTGGAACTCAGCTCAAGGATATTCCGAGCGATCGTATTCAGGACTCGAGTCTTTCATTGCAATGTTGATTCTTCTGGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

136

Amino Acids

15.09

Weight (kDa)

4.97

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	2 cut(s)	100, 129
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	36, 286, 302
AgsI	TTSAA	1 cut(s)	186
AjnI	CCWGG	2 cut(s)	35, 160
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	118, 202
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	37, 162
BfaI	CTAG	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	37, 162
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	37, 162
BoxI	GACNNNNGTC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	12, 36
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 286, 302
Bse3DI	GCAATG	2 cut(s)	381, 393
BseBI	CCWGG	2 cut(s)	37, 162
BseDI	CCNNGG	2 cut(s)	12, 36
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	36, 286, 302
BseMI	GCAATG	2 cut(s)	381, 393
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	36, 286, 302
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	119, 356
BspACI	CCGC	2 cut(s)	100, 129
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	2 cut(s)	381, 393
BssECI	CCNNGG	2 cut(s)	12, 36
BssMI	GATC	2 cut(s)	119, 356
Bst2UI	CCWGG	2 cut(s)	37, 162
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	122, 359
BstMBI	GATC	2 cut(s)	119, 356
BstMCI	CGRYCG	1 cut(s)	359
BstNI	CCWGG	2 cut(s)	37, 162
BstPAI	GACNNNNGTC	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	35, 160
BstSLI	GKGCMC	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	31, 212
CviJI	RGCY	6 cut(s)	5, 41, 155, 275, 295, 338
CviKI_1	RGCY	6 cut(s)	5, 41, 155, 275, 295, 338
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	2 cut(s)	121, 358
DpnII	GATC	2 cut(s)	119, 356
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	35, 160
FaeI	CATG	2 cut(s)	34, 215
FaiI	YATR	5 cut(s)	32, 175, 213, 231, 285
FatI	CATG	2 cut(s)	30, 211
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	307
FokI	GGATG	1 cut(s)	80
FspBI	CTAG	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	34, 215
HinfI	GANTC	6 cut(s)	115, 207, 323, 369, 374, 394
HphI	GGTGA	2 cut(s)	118, 202
Hpy166II	GTNNAC	2 cut(s)	262, 308
Hpy188I	TCNGA	3 cut(s)	88, 112, 352
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	262, 308
HpyAV	CCTTC	2 cut(s)	86, 192
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	34, 215
Kzo9I	GATC	2 cut(s)	119, 356
LguI	GCTCTTC	1 cut(s)	285
LpnPI	CCDG	8 cut(s)	8, 22, 49, 137, 147, 174, 351, 386
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	121, 358
MboI	GATC	2 cut(s)	119, 356
MboII	GAAGA	2 cut(s)	302, 389
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	71, 297, 315
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	3 cut(s)	332, 363, 383
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	10, 113, 118, 134
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	37, 162
MvaI	CCWGG	2 cut(s)	37, 162
NdeII	GATC	2 cut(s)	119, 356
NlaIII	CATG	2 cut(s)	34, 215
NlaIV	GGNNCC	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	115, 207, 394
PflMI	CCANNNNNTGG	1 cut(s)	302
Ple19I	CGATCG	1 cut(s)	359
PleI	GAGTC	3 cut(s)	331, 363, 382
PpsI	GAGTC	3 cut(s)	331, 363, 382
PshAI	GACNNNNGTC	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	35, 160
PspGI	CCWGG	2 cut(s)	35, 160
PspN4I	GGNNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	371
PvuI	CGATCG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	119, 356
SchI	GAGTC	3 cut(s)	332, 363, 383
ScrFI	CCNGG	2 cut(s)	37, 162
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	3 cut(s)	68, 166, 340
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	339, 371
SmoI	CTYRAG	2 cut(s)	339, 371
Sse9I	AATT	3 cut(s)	71, 297, 315
SsiI	CCGC	2 cut(s)	100, 129
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	35, 160
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	118, 372
TasI	AATT	3 cut(s)	71, 297, 315
TfiI	GAWTC	3 cut(s)	115, 207, 394
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 218
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	307
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.