Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

35408262 .. 35412731

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG334100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCTGGTTTCCTCCGGCCTCACTGTTGTTGAGGCTACCAGTTTTGTCTCTCCCAAATGGGTTCCGCAGCTGGCAGATGCAAAGGATGTAATGGAGGCGATTCGGAATGTGGGAGGTGCTAGATTTCCCGTTTTAACCCCTAATCTCAAAGGTTTCGAGGCTGCTGTCGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCTTCAGCTTCTGAGTCTTTTTCAAAATCAAATATAAACTGCAGTATTGAAGACAGTCTCAGACGTTACCGTGATGTTGCTAGTGCCGCTAGAAAGCTTTCTATTCCTGTTCGTGGATATATATCATGTGTTGTCGGCTGTCCAACAGAAGGAGCTGTACCCCCATCTCAAGTAGCATATGTGGCCAAAGAACTGTATGATATGGGTTGCTTTGACATTTCTCTTGGTGATACAATTGGTGTTGGTACTCCAGGTACCGTCATTCCAATGCTTGAAGAGGTGATTGATGTGGTCCCCACTGAAAACCTTGCTGTCCATTTCCATGACACTTATGGCCAAGCTCTTTCAAACATACTAGTATCTCTTCAGATGGGCATCAGCACGGTGGATTCATCAGTTTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCTTCTGGCAATGTTGCCACTGAAGATGTTGTGTACATGCTTAATGGACTTGGAGTGAAGACCAACATAGATCTTCAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCATTTGGGGCGCTCACCTGGTTCAAAGACAGCTGTTGCCTTGAGTAAAGTCCCTGCTCAGACCTCTAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

271

Amino Acids

28.26

Weight (kDa)

5.66

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	1 - 245	1.1e-48	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	2 cut(s)	65, 285
AcoI	YGGCCR	2 cut(s)	381, 532
AcuI	CTGAAG	3 cut(s)	186, 548, 672
AfaI	GTAC	4 cut(s)	357, 445, 454, 665
AfiI	CCNNNNNNNGG	2 cut(s)	311, 347
AgsI	TTSAA	6 cut(s)	222, 248, 473, 546, 707, 765
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	2 cut(s)	448, 757
AluBI	AGCT	8 cut(s)	70, 206, 295, 353, 539, 712, 773, 811
AluI	AGCT	8 cut(s)	70, 206, 295, 353, 539, 712, 773, 811
Alw26I	GTCTC	2 cut(s)	52, 260
AlwNI	CAGNNNCTG	2 cut(s)	209, 599
AoxI	GGCC	3 cut(s)	16, 381, 532
ApeKI	GCWGC	3 cut(s)	67, 161, 170
Asp700I	GAANNNNTTC	1 cut(s)	295
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	753
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	437, 490, 747
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	2 cut(s)	383, 534
BanI	GGYRCC	1 cut(s)	452
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	2 cut(s)	255, 695
BbvI	GCAGC	3 cut(s)	79, 148, 157
BccI	CCATC	3 cut(s)	200, 370, 562
BciT130I	CCWGG	2 cut(s)	450, 759
BcoDI	GTCTC	2 cut(s)	52, 260
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	4 cut(s)	120, 279, 288, 554
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	754
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	4 cut(s)	68, 162, 171, 285
BlsI	GCNGC	4 cut(s)	69, 163, 172, 286
Bme1390I	CCNGG	2 cut(s)	450, 759
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	3 cut(s)	63, 454, 492
BmrFI	CCNGG	2 cut(s)	450, 759
BmsI	GCATC	2 cut(s)	67, 582
BpiI	GAAGAC	2 cut(s)	255, 695
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	2 cut(s)	351, 802
BsaBI	GATNNNNATC	2 cut(s)	319, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 347
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	646
Bse8I	GATNNNNATC	2 cut(s)	319, 572
BseBI	CCWGG	2 cut(s)	450, 759
BseGI	GGATG	1 cut(s)	91
BseJI	GATNNNNATC	2 cut(s)	319, 572
BseLI	CCNNNNNNNGG	2 cut(s)	311, 347
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	3 cut(s)	201, 271, 812
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	79, 148, 157
BseYI	CCCAGC	1 cut(s)	722
BshFI	GGCC	3 cut(s)	18, 383, 534
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	3 cut(s)	476, 740, 776
BslI	CCNNNNNNNGG	2 cut(s)	311, 347
BsmAI	GTCTC	2 cut(s)	52, 260
BsmFI	GGGAC	3 cut(s)	476, 740, 776
BsnI	GGCC	3 cut(s)	18, 383, 534
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	700
BspACI	CCGC	2 cut(s)	65, 285
BspANI	GGCC	3 cut(s)	18, 383, 534
BspCNI	CTCAG	3 cut(s)	202, 270, 811
BspLI	GGNNCC	3 cut(s)	63, 454, 492
BspMAI	CTGCAG	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	646
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	700
Bst2UI	CCWGG	2 cut(s)	450, 759
Bst4CI	ACNGT	6 cut(s)	25, 254, 269, 393, 457, 583
Bst6I	CTCTTC	2 cut(s)	468, 567
BstAUI	TGTACA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	72, 740
BstDEI	CTNAG	4 cut(s)	210, 257, 798, 807
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	1 cut(s)	703
BstMAI	GTCTC	2 cut(s)	52, 260
BstMBI	GATC	1 cut(s)	700
BstMWI	GCNNNNNNNGC	8 cut(s)	167, 170, 176, 197, 284, 380, 629, 748
BstNI	CCWGG	2 cut(s)	450, 759
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	448, 757
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	79, 148, 157
BstV2I	GAAGAC	2 cut(s)	255, 695
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	18, 383, 534
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	21, 495, 648
Cac8I	GCNNGC	2 cut(s)	72, 740
CaiI	CAGNNNCTG	2 cut(s)	209, 599
CfoI	GCGC	1 cut(s)	753
Cfr13I	GGNCC	1 cut(s)	490
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	4 cut(s)	356, 444, 453, 664
CviAII	CATG	4 cut(s)	324, 521, 667, 715
CviQI	GTAC	4 cut(s)	356, 444, 453, 664
DdeI	CTNAG	4 cut(s)	210, 257, 798, 807
DpnI	GATC	1 cut(s)	702
DpnII	GATC	1 cut(s)	700
EaeI	YGGCCR	2 cut(s)	381, 532
Eam1104I	CTCTTC	2 cut(s)	468, 567
EarI	CTCTTC	2 cut(s)	468, 567
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	186, 548, 672
EcoRII	CCWGG	2 cut(s)	448, 757
FaeI	CATG	4 cut(s)	327, 524, 670, 718
FaqI	GGGAC	3 cut(s)	476, 740, 776
FatI	CATG	4 cut(s)	323, 520, 666, 714
FauNDI	CATATG	2 cut(s)	376, 619
Fnu4HI	GCNGC	4 cut(s)	68, 162, 171, 285
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	68, 162, 171, 285
FspBI	CTAG	4 cut(s)	120, 279, 288, 554
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	4 cut(s)	68, 162, 171, 285
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	754
HaeIII	GGCC	3 cut(s)	18, 383, 534
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	753
Hin1II	CATG	4 cut(s)	327, 524, 670, 718
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	100, 212, 587
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	3 cut(s)	437, 490, 747
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	5 cut(s)	105, 211, 260, 567, 801
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	6 cut(s)	25, 254, 269, 393, 457, 583
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	80, 179, 240, 738
HpyF10VI	GCNNNNNNNGC	8 cut(s)	167, 170, 176, 197, 284, 380, 629, 748
HpyF3I	CTNAG	4 cut(s)	210, 257, 798, 807
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	4 cut(s)	327, 524, 670, 718
HspAI	GCGC	1 cut(s)	751
KpnI	GGTACC	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	3 cut(s)	79, 148, 157
LweI	GCATC	2 cut(s)	67, 582
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	4 cut(s)	120, 279, 288, 554
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	1 cut(s)	702
MboI	GATC	1 cut(s)	700
MboII	GAAGA	6 cut(s)	260, 485, 554, 665, 695, 700
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	700
MlsI	TGGCCA	2 cut(s)	383, 534
MluCI	AATT	1 cut(s)	432
MluNI	TGGCCA	2 cut(s)	383, 534
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	8 cut(s)	22, 25, 29, 88, 107, 151, 469, 814
Mox20I	TGGCCA	2 cut(s)	383, 534
MroXI	GAANNNNTTC	1 cut(s)	295
MscI	TGGCCA	2 cut(s)	383, 534
MseI	TTAA	2 cut(s)	134, 672
MslI	CAYNNNNRTG	2 cut(s)	464, 519
Msp20I	TGGCCA	2 cut(s)	383, 534
MspA1I	CMGCKG	2 cut(s)	70, 773
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	450, 759
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	450, 759
MwoI	GCNNNNNNNGC	8 cut(s)	167, 170, 176, 197, 284, 380, 629, 748
NdeI	CATATG	2 cut(s)	376, 619
NdeII	GATC	1 cut(s)	700
NlaIII	CATG	4 cut(s)	327, 524, 670, 718
NlaIV	GGNNCC	3 cut(s)	63, 454, 492
NspI	RCATGY	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	100, 587
PkrI	GCNGC	4 cut(s)	69, 163, 172, 286
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	448, 757
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	448, 757
PspN4I	GGNNCC	3 cut(s)	63, 454, 492
PspPI	GGNCC	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	2 cut(s)	209, 599
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	2 cut(s)	70, 773
RsaI	GTAC	4 cut(s)	357, 445, 454, 665
RsaNI	GTAC	4 cut(s)	356, 444, 453, 664
RseI	CAYNNNNRTG	2 cut(s)	464, 519
SaqAI	TTAA	2 cut(s)	134, 672
SatI	GCNGC	4 cut(s)	68, 162, 171, 285
Sau3AI	GATC	1 cut(s)	700
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	450, 759
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	67, 582
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	464, 519
SmlI	CTYRAG	2 cut(s)	366, 781
SmoI	CTYRAG	2 cut(s)	366, 781
SpeI	ACTAGT	1 cut(s)	553
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	2 cut(s)	65, 285
SspMI	CTAG	4 cut(s)	120, 279, 288, 554
StyD4I	CCNGG	2 cut(s)	448, 757
TaaI	ACNGT	6 cut(s)	25, 254, 269, 393, 457, 583
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	432
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	100, 587
Tru1I	TTAA	2 cut(s)	134, 672
Tru9I	TTAA	2 cut(s)	134, 672
TscAI	CASTG	3 cut(s)	28, 502, 655
TseI	GCWGC	3 cut(s)	67, 161, 170
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	3 cut(s)	28, 502, 655
VpaK11BI	GGWCC	1 cut(s)	490
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	4 cut(s)	120, 279, 288, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.