Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

41421251 .. 41423899

Gene Structure 2649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAATACAATTTCAACTTGGGCATGACACCAAAAACAAAAGTCAGGGGTACCGTCATTCCAATGCTTGAAGAGGTGATTGATGTGGTCCCTACTGAAAAGCTTGATGTCCATTTCCATGACACTTATGGCCAAGCTCTTTCAAACATACTAGTATCTCTTCAGGTAACCACACTGTGCATCTTGGTTTTAGCATGGAAGCTTTTGCCTTATATGGGCATCAGCACAGTGGATTCATCAGTTTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCTTCTGGCAATGTTGCCACTGAGGATGTTGTGTACATGCTTAATGGACTTGGAGTGAAGACCAACATAGATCTTCAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTGGGGCGCTCACCTGGTTCAAAGACAGCTGTTGCCTTGAGTAAAGTCCCTGCTCATACCTCTAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

153

Amino Acids

16.38

Weight (kDa)

8.43

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	72 - 127	3.2e-09	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	52, 311
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	5 cut(s)	16, 71, 144, 353, 411
AhlI	ACTAGT	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	6 cut(s)	103, 137, 202, 358, 419, 457
AluI	AGCT	6 cut(s)	103, 137, 202, 358, 419, 457
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	88, 393
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	405
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	400
BglII	AGATCT	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	52, 90
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	189, 228
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	50
BslFI	GGGAC	3 cut(s)	74, 386, 422
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	3 cut(s)	74, 386, 422
BsnI	GGCC	1 cut(s)	132
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	52, 90
BspT107I	GGYRCC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	309
BssMI	GATC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	55, 177, 229
Bst6I	CTCTTC	2 cut(s)	66, 165
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	297, 453
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 394
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	173, 234, 294
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	88
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	51, 310
CviAII	CATG	5 cut(s)	25, 119, 195, 313, 361
CviJI	RGCY	8 cut(s)	103, 132, 137, 202, 358, 368, 419, 457
CviKI_1	RGCY	8 cut(s)	103, 132, 137, 202, 358, 368, 419, 457
CviQI	GTAC	2 cut(s)	51, 310
DdeI	CTNAG	2 cut(s)	297, 453
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	66, 165
EarI	CTCTTC	2 cut(s)	66, 165
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	403
FaeI	CATG	5 cut(s)	28, 122, 198, 316, 364
FaqI	GGGAC	3 cut(s)	74, 386, 422
FatI	CATG	5 cut(s)	24, 118, 194, 312, 360
FauNDI	CATATG	1 cut(s)	265
FokI	GGATG	1 cut(s)	314
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	398
GsaI	CCCAGC	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	5 cut(s)	28, 122, 198, 316, 364
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HindIII	AAGCTT	2 cut(s)	101, 200
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	2 cut(s)	88, 393
Hpy166II	GTNNAC	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	55, 177, 229
HpyCH4V	TGCA	3 cut(s)	4, 180, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 394
HpyF3I	CTNAG	2 cut(s)	297, 453
Hsp92II	CATG	5 cut(s)	28, 122, 198, 316, 364
HspAI	GCGC	1 cut(s)	397
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	346
LpnPI	CCDG	8 cut(s)	31, 149, 231, 267, 354, 390, 417, 453
LweI	GCATC	2 cut(s)	189, 228
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	4 cut(s)	83, 152, 341, 346
MflI	RGATCY	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	10
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	3 cut(s)	67, 292, 460
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	62, 117
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	275, 394
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	5 cut(s)	28, 122, 198, 316, 364
NlaIV	GGNNCC	2 cut(s)	52, 90
NspI	RCATGY	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	52, 90
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	52, 311
RsaNI	GTAC	2 cut(s)	51, 310
RseI	CAYNNNNRTG	2 cut(s)	62, 117
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	405
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	2 cut(s)	189, 228
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	62, 117
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SpeI	ACTAGT	1 cut(s)	151
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	55, 177, 229
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	180, 234, 301
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	3 cut(s)	180, 234, 301
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.