Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

52255088 .. 52257306

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1420700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGCTATTGCTTCTGGTGCAAAAGAAGTTGGCATATTTGCCTCGGCTTCTCAATCTTTTTCAAAATCAAATATAAACTGCAGTATTGAAGATAGTCTCGTTTGTCATAGTGATGTTGCTATTGCTGCCAGAAAGCTTTTAATTCCTCTTTGTGGATACATATCGTGTGTTGTGGGGTGTCCAGTGGAAGGAAAGATATCCCCATCACAAGTAGCATATGTGGCGAAAGAACTTTATGACATGGGTTGCTCAGAAATTTCTCTTGGTGATACAATTGGTGTTGGTACTCCAGTGTCATTCCAATGCTTGAGGCTGTTGTTGGTGTGGTCCCCACTGAAGCTTGCTGTCCATTTTCATGACACGTATGGGCAAGCTATTTCAAACATACTAGCGTCACTCCAGGTCTTGGGGGTTGTCCGTATGCTAAAGGAGGGAGCTTCCGGAAATGTTGCCACGGAAGATGTTGTGTACATGCTTAATGGACTTGGACTGAAGACCCATGTAGATCTTAAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACCTGGGGCGCTCATCTGGTTCAAAGACAACAGTTGCCTTGCGTAAAGTCACAGCTCCTGCCCCTAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

208

Amino Acids

21.77

Weight (kDa)

8.61

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	2 - 181	2.8e-26	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	359, 515
AfaI	GTAC	2 cut(s)	289, 473
AfiI	CCNNNNNNNGG	3 cut(s)	155, 191, 409
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	66, 92, 384, 573
AjnI	CCWGG	2 cut(s)	402, 552
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	8 cut(s)	8, 139, 343, 377, 440, 520, 605, 619
AluI	AGCT	8 cut(s)	8, 139, 343, 377, 440, 520, 605, 619
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	5, 128
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	330
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	17, 115
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	404, 554
BciVI	GTATCC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	2 cut(s)	6, 129
BlsI	GCNGC	2 cut(s)	7, 130
Bme1390I	CCNGG	2 cut(s)	404, 554
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	404, 554
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	2 cut(s)	276, 386
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	45, 456, 553
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 191, 409
Bse1I	ACTGG	2 cut(s)	185, 293
Bse8I	GATNNNNATC	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	404, 554
BseDI	CCNNGG	3 cut(s)	45, 456, 553
BseJI	GATNNNNATC	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	155, 191, 409
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	185, 293
BseXI	GCAGC	2 cut(s)	17, 115
BseYI	CCCAGC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	316, 548
BslI	CCNNNNNNNGG	3 cut(s)	155, 191, 409
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	316, 548
Bsp13I	TCCGGA	1 cut(s)	443
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	508
BspCNI	CTCAG	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	185, 293
BssECI	CCNNGG	3 cut(s)	45, 456, 553
BssMI	GATC	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	404, 554
Bst4CI	ACNGT	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	345, 375, 548
BstDEI	CTNAG	2 cut(s)	253, 615
BstDSI	CCRYGG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 128, 224, 556
BstNI	CCWGG	2 cut(s)	404, 554
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	402, 552
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	17, 115
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	456
BtsIMutI	CAGTG	3 cut(s)	192, 300, 335
Cac8I	GCNNGC	3 cut(s)	345, 375, 548
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	288, 472
CviAII	CATG	5 cut(s)	244, 359, 475, 503, 523
CviQI	GTAC	2 cut(s)	288, 472
DdeI	CTNAG	2 cut(s)	253, 615
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	359, 515
EcoRII	CCWGG	2 cut(s)	402, 552
EcoRV	GATATC	1 cut(s)	201
FaeI	CATG	5 cut(s)	247, 362, 478, 506, 526
FaqI	GGGAC	2 cut(s)	316, 548
FatI	CATG	5 cut(s)	243, 358, 474, 502, 522
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	6, 129
Fsp4HI	GCNGC	2 cut(s)	6, 129
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	2 cut(s)	6, 129
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	2 cut(s)	276, 386
HaeII	RGCGCY	1 cut(s)	562
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	5 cut(s)	247, 362, 478, 506, 526
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	137, 341
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	359, 444
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	23, 84, 546
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 128, 224, 556
HpyF3I	CTNAG	2 cut(s)	253, 615
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	5 cut(s)	247, 362, 478, 506, 526
HspAI	GCGC	1 cut(s)	559
Kpn2I	TCCGGA	1 cut(s)	443
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	437, 610
Lsp1109I	GCAGC	2 cut(s)	17, 115
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	396, 598
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	3 cut(s)	104, 473, 508
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	3 cut(s)	144, 258, 276
MnlI	CCTC	4 cut(s)	55, 159, 306, 427
MroI	TCCGGA	1 cut(s)	443
MseI	TTAA	3 cut(s)	143, 480, 513
MslI	CAYNNNNRTG	3 cut(s)	114, 304, 357
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	404, 554
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	404, 554
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 128, 224, 556
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	5 cut(s)	247, 362, 478, 506, 526
NlaIV	GGNNCC	1 cut(s)	332
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	396, 598
NspI	RCATGY	1 cut(s)	478
PagI	TCATGA	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	7, 130
Ppu21I	YACGTR	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	402, 552
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	402, 552
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	2 cut(s)	289, 473
RsaNI	GTAC	2 cut(s)	288, 472
RseI	CAYNNNNRTG	3 cut(s)	114, 304, 357
SaqAI	TTAA	3 cut(s)	143, 480, 513
SatI	GCNGC	2 cut(s)	6, 129
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	404, 554
SfcI	CTRYAG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	330
SmiMI	CAYNNNNRTG	3 cut(s)	114, 304, 357
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	144, 258, 276
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	402, 552
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	368
TasI	AATT	3 cut(s)	144, 258, 276
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	3 cut(s)	143, 480, 513
Tru9I	TTAA	3 cut(s)	143, 480, 513
TscAI	CASTG	3 cut(s)	192, 300, 342
TseFI	GTSAC	2 cut(s)	396, 598
TseI	GCWGC	2 cut(s)	5, 128
Tsp45I	GTSAC	2 cut(s)	396, 598
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	2 cut(s)	410, 473
TspRI	CASTG	3 cut(s)	192, 300, 342
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	478
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.