Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014162.1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

130106 .. 133980

Gene Structure 3875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014162.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgatgaggaatatgtattgcgcagttgcacgcggaggagacctcgagccttgctatttgtcaagtcctcgtcgtcatttcacctcttcaatcaataagccggttttaggaaacattccggagtttgtaaagatagtagaagtgggtccgagagatgggctccagaatgagaagcagattgttcctactgacgtcaaggttcggttgatccaaatgctggtttcctccggcctcactgttgttgaggctaccagttttgtctctcccaaatgggttccgcagctggcagatgcaaaggatgtaatggaggcgattcggaatgtgggagtcggctgtccaacggaaggagctgtacccccatctcaagtagcatatgtggccaaagaactgtatgatatgggttgctttgacatttctcttggtgatacaattggtgttggtactccaggtaccgtcattccaatgcttgaagaggtgattgatgtggtccccactgaaaaccttgctgtccatttccatgacacttatggccaagctctttcaaacatactagtatctcttcagatgggcatcagcacagtggattcatcagtttctggtcttgggggttgtccatatgctaaaggtgcttctggcaatgttgccactgaggatgttgtgtacatgcttaatggacttggagtgaagaccaacatagatcttcaaaagctcatgttggctggggactttatctgcaagcacttggggcgctcacctggttcaaagacagctgttgccttgagtaaagtccctgctcagacctctaagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

270

Amino Acids

28.64

Weight (kDa)

5.59

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
Acc16I	TGCGCA	1 cut(s)	22
Acc65I	GGTACC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	2 cut(s)	33, 278
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	2 cut(s)	378, 529
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	354, 442, 451, 662
AfiI	CCNNNNNNNGG	4 cut(s)	107, 155, 217, 344
AgsI	TTSAA	5 cut(s)	90, 470, 543, 704, 762
AhlI	ACTAGT	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	445, 754
AluBI	AGCT	6 cut(s)	283, 350, 536, 709, 770, 808
AluI	AGCT	6 cut(s)	283, 350, 536, 709, 770, 808
Alw26I	GTCTC	2 cut(s)	33, 265
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	3 cut(s)	229, 378, 529
ApeKI	GCWGC	1 cut(s)	280
Asp718I	GGTACC	1 cut(s)	449
AspLEI	GCGC	2 cut(s)	23, 750
AspS9I	GGNCC	2 cut(s)	146, 487
AsuHPI	GGTGA	4 cut(s)	73, 434, 487, 744
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	146, 487
BalI	TGGCCA	2 cut(s)	380, 531
BanI	GGYRCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	3 cut(s)	149, 367, 559
BciT130I	CCWGG	2 cut(s)	447, 756
BcoDI	GTCTC	2 cut(s)	33, 265
BcuI	ACTAGT	1 cut(s)	550
BfaI	CTAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	751
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	447, 756
Bme18I	GGWCC	2 cut(s)	146, 487
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	146, 487
BmiI	GGNNCC	5 cut(s)	147, 161, 276, 451, 489
BmrFI	CCNGG	2 cut(s)	447, 756
BmsI	GCATC	2 cut(s)	280, 579
BpiI	GAAGAC	1 cut(s)	692
BplI	GAGNNNNNCTC	4 cut(s)	27, 59, 144, 176
BpmI	CTGGAG	2 cut(s)	146, 429
BpuEI	CTTGAG	2 cut(s)	348, 799
BsaBI	GATNNNNATC	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 155, 217, 344
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	643
Bse8I	GATNNNNATC	1 cut(s)	569
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	447, 756
BseGI	GGATG	2 cut(s)	304, 658
BseJI	GATNNNNATC	1 cut(s)	569
BseLI	CCNNNNNNNGG	4 cut(s)	107, 155, 217, 344
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	2 cut(s)	639, 809
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	719
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	231, 380, 531
BshNI	GGYRCC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	101, 119, 228
BslFI	GGGAC	3 cut(s)	473, 737, 773
BslI	CCNNNNNNNGG	4 cut(s)	107, 155, 217, 344
BsmAI	GTCTC	2 cut(s)	33, 265
BsmFI	GGGAC	3 cut(s)	473, 737, 773
BsnI	GGCC	3 cut(s)	231, 380, 531
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	207, 697
BspACI	CCGC	2 cut(s)	33, 278
BspANI	GGCC	3 cut(s)	231, 380, 531
BspCNI	CTCAG	2 cut(s)	640, 808
BspEI	TCCGGA	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	5 cut(s)	147, 161, 276, 451, 489
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	643
BsrFI	RCCGGY	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	2 cut(s)	207, 697
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	447, 756
Bst4CI	ACNGT	4 cut(s)	238, 390, 454, 580
Bst6I	CTCTTC	3 cut(s)	91, 465, 564
BstACI	GRCGYC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	3 cut(s)	31, 285, 737
BstDEI	CTNAG	3 cut(s)	648, 795, 804
BstF5I	GGATG	2 cut(s)	304, 658
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	2 cut(s)	23, 750
BstKTI	GATC	2 cut(s)	210, 700
BstMAI	GTCTC	2 cut(s)	33, 265
BstMBI	GATC	2 cut(s)	207, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 626, 745
BstNI	CCWGG	2 cut(s)	447, 756
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	2 cut(s)	445, 754
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	231, 380, 531
BtsCI	GGATG	2 cut(s)	304, 658
BtsIMutI	CAGTG	4 cut(s)	234, 492, 585, 645
Cac8I	GCNNGC	3 cut(s)	31, 285, 737
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	23, 750
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	146, 487
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	4 cut(s)	353, 441, 450, 661
CviAII	CATG	3 cut(s)	518, 664, 712
CviQI	GTAC	4 cut(s)	353, 441, 450, 661
DdeI	CTNAG	3 cut(s)	648, 795, 804
DpnI	GATC	2 cut(s)	209, 699
DpnII	GATC	2 cut(s)	207, 697
EaeI	YGGCCR	2 cut(s)	378, 529
Eam1104I	CTCTTC	3 cut(s)	91, 465, 564
EarI	CTCTTC	3 cut(s)	91, 465, 564
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	146, 487
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	445, 754
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	3 cut(s)	521, 667, 715
FaqI	GGGAC	3 cut(s)	473, 737, 773
FatI	CATG	3 cut(s)	517, 663, 711
FauNDI	CATATG	2 cut(s)	373, 616
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	311, 665
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	1 cut(s)	551
FspI	TGCGCA	1 cut(s)	22
GlaI	GCGC	2 cut(s)	22, 749
GluI	GCNGC	1 cut(s)	281
GsaI	CCCAGC	1 cut(s)	723
GsuI	CTGGAG	2 cut(s)	146, 429
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	3 cut(s)	231, 380, 531
HapII	CCGG	3 cut(s)	101, 119, 228
HhaI	GCGC	2 cut(s)	23, 750
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	521, 667, 715
Hin6I	GCGC	2 cut(s)	21, 748
HinP1I	GCGC	2 cut(s)	21, 748
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	3 cut(s)	313, 327, 584
HpaII	CCGG	3 cut(s)	101, 119, 228
HphI	GGTGA	4 cut(s)	73, 434, 487, 744
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	4 cut(s)	150, 318, 564, 798
Hpy188III	TCNNGA	2 cut(s)	119, 163
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	4 cut(s)	238, 390, 454, 580
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	29, 293, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 626, 745
HpyF3I	CTNAG	3 cut(s)	648, 795, 804
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	521, 667, 715
HspAI	GCGC	2 cut(s)	21, 748
Kpn2I	TCCGGA	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	207, 697
LmnI	GCTCC	2 cut(s)	165, 347
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	280, 579
MabI	ACCWGGT	1 cut(s)	754
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	192
MalI	GATC	2 cut(s)	209, 699
MboI	GATC	2 cut(s)	207, 697
MboII	GAAGA	5 cut(s)	78, 482, 551, 692, 697
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	2 cut(s)	380, 531
MluCI	AATT	1 cut(s)	429
MluNI	TGGCCA	2 cut(s)	380, 531
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	362
Mox20I	TGGCCA	2 cut(s)	380, 531
MroI	TCCGGA	1 cut(s)	118
MscI	TGGCCA	2 cut(s)	380, 531
MseI	TTAA	2 cut(s)	669, 811
MslI	CAYNNNNRTG	2 cut(s)	461, 516
Msp20I	TGGCCA	2 cut(s)	380, 531
MspA1I	CMGCKG	2 cut(s)	283, 770
MspI	CCGG	3 cut(s)	101, 119, 228
MspR9I	CCNGG	2 cut(s)	447, 756
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	447, 756
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	377, 626, 745
NdeI	CATATG	2 cut(s)	373, 616
NdeII	GATC	2 cut(s)	207, 697
NlaIII	CATG	3 cut(s)	521, 667, 715
NlaIV	GGNNCC	5 cut(s)	147, 161, 276, 451, 489
NsbI	TGCGCA	1 cut(s)	22
NspI	RCATGY	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	313, 584
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	445, 754
PspFI	CCCAGC	1 cut(s)	719
PspGI	CCWGG	2 cut(s)	445, 754
PspN4I	GGNNCC	5 cut(s)	147, 161, 276, 451, 489
PspPI	GGNCC	2 cut(s)	146, 487
PspXI	VCTCGAGB	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	697
PvuII	CAGCTG	2 cut(s)	283, 770
RsaI	GTAC	4 cut(s)	354, 442, 451, 662
RsaNI	GTAC	4 cut(s)	353, 441, 450, 661
RseI	CAYNNNNRTG	2 cut(s)	461, 516
SaqAI	TTAA	2 cut(s)	669, 811
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	207, 697
Sau96I	GGNCC	2 cut(s)	146, 487
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	447, 756
SduI	GDGCHC	1 cut(s)	162
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	2 cut(s)	280, 579
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	146, 487
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	461, 516
SmlI	CTYRAG	3 cut(s)	44, 363, 778
SmoI	CTYRAG	3 cut(s)	44, 363, 778
SpeI	ACTAGT	1 cut(s)	550
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	2 cut(s)	33, 278
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	445, 754
TaaI	ACNGT	4 cut(s)	238, 390, 454, 580
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	2 cut(s)	313, 584
Tru1I	TTAA	2 cut(s)	669, 811
Tru9I	TTAA	2 cut(s)	669, 811
TscAI	CASTG	4 cut(s)	241, 499, 585, 652
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	4 cut(s)	241, 499, 585, 652
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	146, 487
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	551
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.