Prupe.4G270500_v2.0.a1

Hydroxymethylglutaryl-CoA lyase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
21897415 .. 21904661
7247 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G270500.3

Sequence Viewer

Length: 1290 bp
ATGTCGAGCTTGGAGGAGCCACTTGGTTTTGACAAGTTGCCTAGCATGAGTACTATTGATCGGGTTCAAAGATTCTCATCTAGTGCTTGCAGGTCTAGAGCAGATGATGCGGCCATGGGGAACTGTTGGATTGAAGGAAGAAGTTGTAGCACATCCAATAGCTGCAACGAAGATTATGAAGAATATACAAGAGAGGCCTTTCCATGGAAAAGACATACAAGAGACATTTCCCGTGGTGACTCCTTCAATCAAAGGACCTTGAGCTTAGGCAGGAATCACAGGGTATTTGGAAATATTTGTGATTCATGGTATTTGTCAGATCAATATGAGTCCAAGTGCAATGACAAAGATATAACAAATAAGATTTTGAAAGGTATACCAAAGTTTGTAAAGATAGTAGAAGTTGGTCCAAGGGATGGACTTCAAAATGAAAAGAATATTGTATCTGCATCTGTAAAGATTGAATTGATTCATAGACTGGTATCTTGTGGGTTGTCTGTTGTTGAGGCTACAAGTTTTGTATCACCCAAATGGGTTCCTCAGCTAGCAGATGCAAAGGATGTAATGGAAGTAGTTCACAATTTGGAGGGTGCTAGATTGCCTGTGCTGACACCCAATTTAAAAGGCTTTGAAGCAGCTATTGCAGCTGGTGCTAAGGACATAGCAGTCTTTGCATCAGCTTCTGAATCATTTTCAAAGTCGAACATCAATTGTAGCATTGAAGAAAGTCTTGTTCGTTATCGTGCTGTTACTCGTGCGGCAAAAGAGCTTTCAATTCCTGTTCGAGGGTATGTCTCATGTGCCATTGGATGTCCAGTGGAGGGAGCAATTCCTCCATCAAGAGTGGCATATGTAGCAAAAGAACTTTACAACATGGGCTGCTTTGAAATTTCTCTTGGTGACACAATTGGGGTTGGTACACCTGGGACGGTTGTCCCCATGCTTGAAGCTGTGATTGCTGTTGTTCCTGTTGAGAAGCTTGCTGTTCACTTCCATGACACCTATGGGCAATCTCTTTCAAACATTCTTGTATCTCTTCAAATGGGGATTAGCATAGTGGATTCCTCTATTGCGGGTTTAGGTGGGTGTCCGTATGCTAAGGGAGCTTCAGGTAACGTTGCCACTGAAGATGTTGTATACATGCTTAACGGACTTGGTGTCAAAACCAATGTGGATTTGGCGAAACTCTTGATGGCTGGGGACTTCATCAGCAAGCATTTGGGCCGCCCCTCTGGTTCAAAGACTGCCGTAGCTTTGAGCCGAGTTACAGCCGATGCCTCTAAGATATAA

Protein Analysis

430

Amino Acids

46.18

Weight (kDa)

6.67

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 416
AccI GTMKAC 2 cut(s) 376, 1137
AciI CCGC 4 cut(s) 110, 758, 1073, 1225
AclI AACGTT 1 cut(s) 1116
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 888
AcuI CTGAAG 2 cut(s) 1092, 1146
AfaI GTAC 2 cut(s) 52, 919
AfiI CCNNNNNNNGG 4 cut(s) 204, 416, 785, 821
AhdI GACNNNNNGTC 1 cut(s) 1157
AjnI CCWGG 1 cut(s) 922
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
Alw26I GTCTC 2 cut(s) 216, 799
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 3 cut(s) 111, 195, 1222
ApeKI GCWGC 4 cut(s) 162, 635, 644, 879
ApoI RAATTY 1 cut(s) 888
Asp700I GAANNNNTTC 2 cut(s) 468, 573
AspS9I GGNCC 3 cut(s) 255, 407, 1222
AsuHPI GGTGA 3 cut(s) 248, 516, 911
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 2 cut(s) 255, 407
BauI CACGAG 1 cut(s) 753
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 149, 647, 656, 866
BccI CCATC 3 cut(s) 410, 844, 1186
BceAI ACGGC 1 cut(s) 1232
BciT130I CCWGG 1 cut(s) 924
BcoDI GTCTC 2 cut(s) 216, 799
BfaI CTAG 5 cut(s) 42, 81, 96, 545, 594
BfuAI ACCTGC 1 cut(s) 81
BisI GCNGC 7 cut(s) 111, 163, 636, 645, 759, 880, 1225
BlsI GCNGC 7 cut(s) 112, 164, 637, 646, 760, 881, 1226
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 924
Bme18I GGWCC 2 cut(s) 255, 407
BmeRI GACNNNNNGTC 1 cut(s) 1157
BmgT120I GGNCC 3 cut(s) 255, 407, 1222
BmiI GGNNCC 2 cut(s) 18, 537
BmrFI CCNGG 1 cut(s) 924
BmsI GCATC 5 cut(s) 97, 458, 541, 683, 1264
BmtI GCTAGC 1 cut(s) 548
BoxI GACNNNNGTC 1 cut(s) 932
Bpu10I CCTNAGC 4 cut(s) 265, 540, 654, 1098
BpuEI CTTGAG 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 76
BsaJI CCNNGG 5 cut(s) 114, 203, 232, 410, 923
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 416, 785, 821
Bse1I ACTGG 2 cut(s) 483, 815
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 1 cut(s) 924
BseDI CCNNGG 5 cut(s) 114, 203, 232, 410, 923
BseGI GGATG 4 cut(s) 152, 421, 565, 815
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 4 cut(s) 204, 416, 785, 821
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 2 cut(s) 483, 815
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 4 cut(s) 149, 647, 656, 866
BseYI CCCAGC 1 cut(s) 1196
BshFI GGCC 3 cut(s) 113, 197, 1224
BslFI GGGAC 3 cut(s) 920, 940, 1214
BslI CCNNNNNNNGG 4 cut(s) 204, 416, 785, 821
BsmAI GTCTC 2 cut(s) 216, 799
BsmFI GGGAC 3 cut(s) 920, 940, 1214
BsnI GGCC 3 cut(s) 113, 197, 1224
Bsp143I GATC 2 cut(s) 58, 319
Bsp19I CCATGG 2 cut(s) 114, 203
BspACI CCGC 4 cut(s) 110, 758, 1073, 1225
BspANI GGCC 3 cut(s) 113, 197, 1224
BspCNI CTCAG 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 18, 537
BspMI ACCTGC 1 cut(s) 81
BspOI GCTAGC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 2 cut(s) 483, 815
BssECI CCNNGG 5 cut(s) 114, 203, 232, 410, 923
BssMI GATC 2 cut(s) 58, 319
BssNAI GTATAC 2 cut(s) 377, 1138
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 3 cut(s) 114, 203, 410
Bst1107I GTATAC 2 cut(s) 377, 1138
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 924
Bst4CI ACNGT 2 cut(s) 125, 931
Bst6I CTCTTC 1 cut(s) 1041
BstAPI GCANNNNNTGC 4 cut(s) 107, 641, 650, 671
BstC8I GCNNGC 4 cut(s) 88, 546, 981, 1214
BstDEI CTNAG 5 cut(s) 265, 540, 654, 1098, 1281
BstDSI CCRYGG 3 cut(s) 114, 203, 232
BstENI CCTNNNNNAGG 1 cut(s) 783
BstF5I GGATG 4 cut(s) 152, 421, 565, 815
BstKTI GATC 2 cut(s) 61, 322
BstMAI GTCTC 2 cut(s) 216, 799
BstMBI GATC 2 cut(s) 58, 319
BstMWI GCNNNNNNNGC 8 cut(s) 107, 641, 644, 650, 671, 854, 956, 1103
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 1 cut(s) 1144
BstPAI GACNNNNGTC 1 cut(s) 932
BstSCI CCNGG 1 cut(s) 922
BstV1I GCAGC 4 cut(s) 149, 647, 656, 866
BstZ17I GTATAC 2 cut(s) 377, 1138
BsuRI GGCC 3 cut(s) 113, 197, 1224
BtgI CCRYGG 3 cut(s) 114, 203, 232
BtsCI GGATG 4 cut(s) 152, 421, 565, 815
BtsIMutI CAGTG 2 cut(s) 822, 1122
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 4 cut(s) 88, 546, 981, 1214
CaiI CAGNNNCTG 1 cut(s) 683
Cfr13I GGNCC 3 cut(s) 255, 407, 1222
Csp6I GTAC 2 cut(s) 51, 918
CviAII CATG 9 cut(s) 46, 115, 204, 306, 798, 874, 940, 995, 1141
CviQI GTAC 2 cut(s) 51, 918
DdeI CTNAG 5 cut(s) 265, 540, 654, 1098, 1281
DpnI GATC 2 cut(s) 60, 321
DpnII GATC 2 cut(s) 58, 319
DraI TTTAAA 1 cut(s) 621
DrdI GACNNNNNNGTC 1 cut(s) 665
DriI GACNNNNNGTC 1 cut(s) 1157
DseDI GACNNNNNNGTC 1 cut(s) 665
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 1041
Eam1105I GACNNNNNGTC 1 cut(s) 1157
EarI CTCTTC 1 cut(s) 1041
Eco130I CCWWGG 3 cut(s) 114, 203, 410
Eco147I AGGCCT 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 255, 407
Eco57I CTGAAG 2 cut(s) 1092, 1146
EcoNI CCTNNNNNAGG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 922
EcoT14I CCWWGG 3 cut(s) 114, 203, 410
ErhI CCWWGG 3 cut(s) 114, 203, 410
FaeI CATG 9 cut(s) 49, 118, 207, 309, 801, 877, 943, 998, 1144
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FaqI GGGAC 3 cut(s) 920, 940, 1214
FatI CATG 9 cut(s) 45, 114, 203, 305, 797, 873, 939, 994, 1140
FauI CCCGC 1 cut(s) 1066
FauNDI CATATG 1 cut(s) 850
FblI GTMKAC 2 cut(s) 376, 1137
Fnu4HI GCNGC 7 cut(s) 111, 163, 636, 645, 759, 880, 1225
FokI GGATG 4 cut(s) 139, 428, 572, 822
Fsp4HI GCNGC 7 cut(s) 111, 163, 636, 645, 759, 880, 1225
FspBI CTAG 5 cut(s) 42, 81, 96, 545, 594
GluI GCNGC 7 cut(s) 111, 163, 636, 645, 759, 880, 1225
GsaI CCCAGC 1 cut(s) 1200
HaeIII GGCC 3 cut(s) 113, 197, 1224
Hin1II CATG 9 cut(s) 49, 118, 207, 309, 801, 877, 943, 998, 1144
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 8 cut(s) 72, 239, 274, 302, 329, 469, 686, 1061
HphI GGTGA 3 cut(s) 248, 516, 911
Hpy166II GTNNAC 5 cut(s) 377, 577, 920, 988, 1138
Hpy188I TCNGA 2 cut(s) 319, 685
Hpy188III TCNNGA 3 cut(s) 96, 840, 1189
Hpy8I GTNNAC 5 cut(s) 377, 577, 920, 988, 1138
HpyAV CCTTC 2 cut(s) 128, 253
HpyCH4III ACNGT 2 cut(s) 125, 931
HpyCH4IV ACGT 1 cut(s) 1116
HpyCH4V TGCA 7 cut(s) 90, 165, 339, 449, 554, 644, 674
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 641, 644, 650, 671, 854, 956, 1103
HpyF3I CTNAG 5 cut(s) 265, 540, 654, 1098, 1281
HpySE526I ACGT 1 cut(s) 1116
Hsp92II CATG 9 cut(s) 49, 118, 207, 309, 801, 877, 943, 998, 1144
Kzo9I GATC 2 cut(s) 58, 319
LmnI GCTCC 3 cut(s) 16, 824, 1103
Lsp1109I GCAGC 4 cut(s) 149, 647, 656, 866
LweI GCATC 5 cut(s) 97, 458, 541, 683, 1264
MaeI CTAG 5 cut(s) 42, 81, 96, 545, 594
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 5 cut(s) 236, 748, 899, 1112, 1264
MalI GATC 2 cut(s) 60, 321
MboI GATC 2 cut(s) 58, 319
MboII GAAGA 6 cut(s) 150, 182, 191, 734, 1028, 1139
MfeI CAATTG 2 cut(s) 709, 906
MluCI AATT 8 cut(s) 464, 580, 616, 709, 774, 828, 888, 906
MlyI GAGTC 2 cut(s) 233, 338
MmeI TCCRAC 1 cut(s) 107
MroXI GAANNNNTTC 2 cut(s) 468, 573
MseI TTAA 2 cut(s) 620, 1146
MslI CAYNNNNRTG 2 cut(s) 529, 993
MspA1I CMGCKG 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 924
MunI CAATTG 2 cut(s) 709, 906
MvaI CCWGG 1 cut(s) 924
MwoI GCNNNNNNNGC 8 cut(s) 107, 641, 644, 650, 671, 854, 956, 1103
NcoI CCATGG 2 cut(s) 114, 203
NdeI CATATG 1 cut(s) 850
NdeII GATC 2 cut(s) 58, 319
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 9 cut(s) 49, 118, 207, 309, 801, 877, 943, 998, 1144
NlaIV GGNNCC 2 cut(s) 18, 537
NmeAIII GCCGAG 1 cut(s) 1286
NmuCI GTSAC 2 cut(s) 236, 899
NspI RCATGY 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 197
PdmI GAANNNNTTC 2 cut(s) 468, 573
PfeI GAWTC 6 cut(s) 72, 274, 302, 469, 686, 1061
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 7 cut(s) 112, 164, 637, 646, 760, 881, 1226
PleI GAGTC 2 cut(s) 233, 337
PpsI GAGTC 2 cut(s) 233, 337
PpuMI RGGWCCY 1 cut(s) 255
PshAI GACNNNNGTC 1 cut(s) 932
Psp1406I AACGTT 1 cut(s) 1116
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 1196
PspGI CCWGG 1 cut(s) 922
PspN4I GGNNCC 2 cut(s) 18, 537
PspPI GGNCC 3 cut(s) 255, 407, 1222
PspPPI RGGWCCY 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 683
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 2 cut(s) 52, 919
RsaNI GTAC 2 cut(s) 51, 918
RseI CAYNNNNRTG 2 cut(s) 529, 993
SaqAI TTAA 2 cut(s) 620, 1146
SatI GCNGC 7 cut(s) 111, 163, 636, 645, 759, 880, 1225
Sau3AI GATC 2 cut(s) 58, 319
Sau96I GGNCC 3 cut(s) 255, 407, 1222
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 2 cut(s) 233, 338
ScrFI CCNGG 1 cut(s) 924
SfaNI GCATC 5 cut(s) 97, 458, 541, 683, 1264
SinI GGWCC 2 cut(s) 255, 407
SmiMI CAYNNNNRTG 2 cut(s) 529, 993
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 8 cut(s) 464, 580, 616, 709, 774, 828, 888, 906
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 4 cut(s) 110, 758, 1073, 1225
SspI AATATT 2 cut(s) 295, 439
SspMI CTAG 5 cut(s) 42, 81, 96, 545, 594
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 922
StyI CCWWGG 3 cut(s) 114, 203, 410
TaaI ACNGT 2 cut(s) 125, 931
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 3 cut(s) 5, 701, 784
TasI AATT 8 cut(s) 464, 580, 616, 709, 774, 828, 888, 906
TatI WGTACW 1 cut(s) 50
TauI GCSGC 3 cut(s) 113, 761, 1227
TfiI GAWTC 6 cut(s) 72, 274, 302, 469, 686, 1061
Tru1I TTAA 2 cut(s) 620, 1146
Tru9I TTAA 2 cut(s) 620, 1146
TscAI CASTG 2 cut(s) 822, 1129
TseFI GTSAC 2 cut(s) 236, 899
TseI GCWGC 4 cut(s) 162, 635, 644, 879
Tsp45I GTSAC 2 cut(s) 236, 899
TspDTI ATGAA 5 cut(s) 192, 294, 444, 461, 1195
TspGWI ACGGA 2 cut(s) 1080, 1164
TspRI CASTG 2 cut(s) 822, 1129
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 255, 407
XagI CCTNNNNNAGG 1 cut(s) 783
XapI RAATTY 1 cut(s) 888
XbaI TCTAGA 1 cut(s) 95
XceI RCATGY 1 cut(s) 1144
XcmI CCANNNNNNNNNTGG 2 cut(s) 1001, 1174
XmiI GTMKAC 2 cut(s) 376, 1137
XmnI GAANNNNTTC 2 cut(s) 468, 573
XspI CTAG 5 cut(s) 42, 81, 96, 545, 594
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.