Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000537

Physical Location & Seq

Genomic Coordinates Reverse (-)

12633065 .. 12634120

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCGATGATTCCAAGTTTCTTCAACAACAACAGACGAAGCAACATCTTTGATCCATTCTCTCTTGACGTATGGGATCCATTCAAGGAACTAACATCATCATCACTTTCTCGTGAGAACTCAGCGATCGTGAACGCACGTGTGGACTGGAGAGAGACGCCTGAGGCCCACGTGTTTAAAGCTGACTTGCCTGGATTGAAGAAGGAGGAAGTTAAAGTTGAGATTGAGGAGGATAGTGTTTTGAAGATCAGTGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGACACGTGGCACCGTGTGGAGAGATCGAGTGGACAGTTTACGAGGAGGTTTAGGTTGCCGGAGAATGTGAAGATGGATCAGGTTAAGGCTGCGATGGAGAATGGTGTGTTGACTGTTACGGTGCCTAAGGCTGAGACTAAGAAGGCTGATGTTAAGTCTATTCAGATCTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0042493 GO:0042542 GO:0043621 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

153

Amino Acids

17.56

Weight (kDa)

6.33

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	49 - 152	3.1e-32	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07400 AT2G29500
fragaria_vesca	FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica	MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica	Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata	RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora	Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa	Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha	Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana	Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	294, 406
AclWI	GGATC	4 cut(s)	47, 71, 84, 369
AcvI	CACGTG	4 cut(s)	140, 172, 265, 291
AcyI	GRCGYC	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	301
AflIII	ACRYGT	4 cut(s)	139, 171, 262, 288
AgsI	TTSAA	4 cut(s)	25, 85, 199, 244
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	3 cut(s)	149, 253, 413
AlwI	GGATC	4 cut(s)	47, 71, 84, 369
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	166
AxyI	CCTNAGG	2 cut(s)	162, 411
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	2 cut(s)	294, 406
BauI	CACGAG	1 cut(s)	111
BbrPI	CACGTG	4 cut(s)	140, 172, 265, 291
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	352, 373
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	149, 253, 413
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	78, 296, 408
BmrFI	CCNGG	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	169
BsaAI	YACGTR	4 cut(s)	140, 172, 265, 291
BsaHI	GRCGYC	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	152
Bse21I	CCTNAGG	2 cut(s)	162, 411
BseBI	CCWGG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	135, 153, 408
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	2 cut(s)	242, 343
BseXI	GCAGC	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	2 cut(s)	294, 406
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	344
BsmAI	GTCTC	3 cut(s)	149, 253, 413
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	134, 154, 409
BspLI	GGNNCC	3 cut(s)	78, 296, 408
BspPI	GGATC	4 cut(s)	47, 71, 84, 369
BspT107I	GGYRCC	2 cut(s)	294, 406
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
BssNI	GRCGYC	1 cut(s)	158
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	299, 321, 400, 406
BstACI	GRCGYC	1 cut(s)	158
BstBAI	YACGTR	4 cut(s)	140, 172, 265, 291
BstDEI	CTNAG	5 cut(s)	121, 162, 411, 417, 423
BstKTI	GATC	7 cut(s)	55, 79, 129, 249, 311, 364, 453
BstMAI	GTCTC	3 cut(s)	149, 253, 413
BstMBI	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
BstMCI	CGRYCG	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	76, 450
BstYI	RGATCY	2 cut(s)	76, 450
Bsu36I	CCTNAGG	2 cut(s)	162, 411
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	5 cut(s)	167, 182, 374, 416, 431
CviKI_1	RGCY	5 cut(s)	167, 182, 374, 416, 431
DdeI	CTNAG	5 cut(s)	121, 162, 411, 417, 423
DpnI	GATC	7 cut(s)	54, 78, 128, 248, 310, 363, 452
DpnII	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
DraI	TTTAAA	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	301
Eco72I	CACGTG	4 cut(s)	140, 172, 265, 291
Eco81I	CCTNAGG	2 cut(s)	162, 411
EcoRII	CCWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	344
Hpy166II	GTNNAC	5 cut(s)	133, 145, 317, 324, 396
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	65, 113, 130
Hpy8I	GTNNAC	5 cut(s)	133, 145, 317, 324, 396
HpyAV	CCTTC	2 cut(s)	196, 421
HpyCH4III	ACNGT	4 cut(s)	299, 321, 400, 406
HpyCH4IV	ACGT	5 cut(s)	69, 139, 171, 264, 290
HpyF3I	CTNAG	5 cut(s)	121, 162, 411, 417, 423
HpySE526I	ACGT	5 cut(s)	69, 139, 171, 264, 290
Hsp92I	GRCGYC	1 cut(s)	158
Kzo9I	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
LpnPI	CCDG	7 cut(s)	133, 174, 177, 204, 350, 357, 441
Lsp1109I	GCAGC	1 cut(s)	361
MaeII	ACGT	5 cut(s)	69, 139, 171, 264, 290
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	7 cut(s)	54, 78, 128, 248, 310, 363, 452
MboI	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
MboII	GAAGA	5 cut(s)	13, 211, 256, 287, 367
MflI	RGATCY	2 cut(s)	76, 450
MnlI	CCTC	6 cut(s)	157, 199, 220, 223, 321, 324
MseI	TTAA	4 cut(s)	177, 213, 369, 438
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
NdeII	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
NlaIV	GGNNCC	3 cut(s)	78, 296, 408
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	376
Ple19I	CGATCG	1 cut(s)	129
PmaCI	CACGTG	4 cut(s)	140, 172, 265, 291
PmlI	CACGTG	4 cut(s)	140, 172, 265, 291
Ppu21I	YACGTR	4 cut(s)	140, 172, 265, 291
Psp6I	CCWGG	1 cut(s)	190
PspCI	CACGTG	4 cut(s)	140, 172, 265, 291
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	78, 296, 408
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	76, 450
PvuI	CGATCG	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	177, 213, 369, 438
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	7 cut(s)	52, 76, 126, 246, 308, 361, 450
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	9 cut(s)	72, 142, 174, 184, 267, 293, 335, 341, 369
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	4 cut(s)	299, 321, 400, 406
TaiI	ACGT	5 cut(s)	72, 142, 174, 267, 293
TaqI	TCGA	2 cut(s)	5, 311
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	4 cut(s)	177, 213, 369, 438
Tru9I	TTAA	4 cut(s)	177, 213, 369, 438
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	374
TspRI	CASTG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.