Prupe.2G243400_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000537
Physical Location & Seq
Reverse (-)
26187755 .. 26188946
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G243400.1

Sequence Viewer

Length: 498 bp
ATGTCTTTGATTCCAAGCGTCTTCGGCGGCCGAAGGACTAACGTCTTCGACCCATTCTCTCTCGACATCTGGGATCCATTCCAGGACTTCCCGTTGATCAGCGGCGGTAGCAACGCGGTCTCGTCAGGTCCTCGGTCGGAGCTGGCGAGCGAGACGGCGGCGGTGGCGAACACAAGGATCGACTGGAAGGAGACGCCGGAGGCGCACGTGTTCAAGGCGGACCTTCCGGGGCTGAAGAAGGAGGAGGTGAAAGTGGAGGTTGAGGAAGGAAGGGTGCTGCAGATCAGCGGAGAGAGGAGCAGAGAGAAGGAGGAGAAGAACGACAAGTGGCACAGGGTGGAGAGGAGCAGCGGCAAGTTCCTGAGGCGGTTCAGGCTGCCTGAGAACGCGAAGGTGGGGGAGGTGAAGGCTAGTTTGGAGAACGGGGTGCTGACTGTGACTGTGCCCAAAGAGGAGGGGAAGAAGCCTGATGTTAAGGCCGTTGAGATTTCTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

166

Amino Acids

18.35

Weight (kDa)

6.21

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 116, 389
AclWI GGATC 3 cut(s) 68, 81, 185
AcoI YGGCCR 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 3 cut(s) 124, 146, 185
AlwI GGATC 3 cut(s) 68, 81, 185
AoxI GGCC 2 cut(s) 28, 477
ApeKI GCWGC 3 cut(s) 277, 348, 376
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 128, 220
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 259, 415
AvaII GGWCC 2 cut(s) 128, 220
AxyI CCTNAGG 1 cut(s) 362
BaeGI GKGCMC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 73
BbrPI CACGTG 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 13, 37
BbvI GCAGC 3 cut(s) 264, 360, 363
BceAI ACGGC 2 cut(s) 171, 464
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 124, 146, 185
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 278
BisI GCNGC 7 cut(s) 28, 103, 159, 278, 349, 352, 377
BlsI GCNGC 7 cut(s) 29, 104, 160, 279, 350, 353, 378
Bme1390I CCNGG 2 cut(s) 83, 228
Bme18I GGWCC 2 cut(s) 128, 220
BmgT120I GGNCC 2 cut(s) 128, 220
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 2 cut(s) 83, 228
BoxI GACNNNNGTC 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 13, 37
BpuMI CCSGG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 131, 227
Bse1I ACTGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 131, 227
BseMII CTCAG 2 cut(s) 353, 372
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 5 cut(s) 257, 310, 326, 358, 467
BseSI GKGCMC 1 cut(s) 447
BseX3I CGGCCG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 264, 360, 363
Bsh1236I CGCG 2 cut(s) 116, 389
Bsh1285I CGRYCG 2 cut(s) 31, 137
BshFI GGCC 2 cut(s) 30, 479
BsiEI CGRYCG 2 cut(s) 31, 137
BsiSI CCGG 2 cut(s) 197, 227
BsmAI GTCTC 3 cut(s) 124, 146, 185
BsmBI CGTCTC 2 cut(s) 146, 185
BsnI GGCC 2 cut(s) 30, 479
Bso31I GGTCTC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 4 cut(s) 73, 96, 177, 282
BspANI GGCC 2 cut(s) 30, 479
BspCNI CTCAG 2 cut(s) 354, 373
BspFNI CGCG 2 cut(s) 116, 389
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 3 cut(s) 68, 81, 185
BspTNI GGTCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 131, 227
BssMI GATC 4 cut(s) 73, 96, 177, 282
BssNI GRCGYC 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 436, 442
BstACI GRCGYC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 144, 148
BstDEI CTNAG 2 cut(s) 362, 381
BstFNI CGCG 2 cut(s) 116, 389
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 4 cut(s) 76, 99, 180, 285
BstMAI GTCTC 3 cut(s) 124, 146, 185
BstMBI GATC 4 cut(s) 73, 96, 177, 282
BstMCI CGRYCG 2 cut(s) 31, 137
BstMWI GCNNNNNNNGC 5 cut(s) 24, 108, 164, 202, 373
BstNI CCWGG 1 cut(s) 83
BstPAI GACNNNNGTC 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 81, 226
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 2 cut(s) 116, 389
BstV1I GCAGC 3 cut(s) 264, 360, 363
BstV2I GAAGAC 2 cut(s) 13, 37
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZI CGGCCG 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 362
BsuRI GGCC 2 cut(s) 30, 479
Cac8I GCNNGC 2 cut(s) 144, 148
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 128, 220
CseI GACGC 2 cut(s) 7, 202
CviJI RGCY 8 cut(s) 30, 142, 232, 376, 410, 466, 479, 495
CviKI_1 RGCY 8 cut(s) 30, 142, 232, 376, 410, 466, 479, 495
DdeI CTNAG 2 cut(s) 362, 381
DpnI GATC 4 cut(s) 75, 98, 179, 284
DpnII GATC 4 cut(s) 73, 96, 177, 282
DraIII CACNNNGTG 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 28
EagI CGGCCG 1 cut(s) 28
EciI GGCGGA 1 cut(s) 233
EclXI CGGCCG 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 128, 220
Eco52I CGGCCG 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 81
Esp3I CGTCTC 2 cut(s) 146, 185
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 28, 103, 159, 278, 349, 352, 377
Fsp4HI GCNGC 7 cut(s) 28, 103, 159, 278, 349, 352, 377
FspBI CTAG 1 cut(s) 411
GlaI GCGC 1 cut(s) 204
GluI GCNGC 7 cut(s) 28, 103, 159, 278, 349, 352, 377
HaeIII GGCC 2 cut(s) 30, 479
HapII CCGG 2 cut(s) 197, 227
HgaI GACGC 2 cut(s) 7, 202
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 197, 227
HphI GGTGA 2 cut(s) 259, 415
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 62, 361
HpyAV CCTTC 9 cut(s) 27, 181, 232, 233, 260, 264, 301, 385, 400
HpyCH4III ACNGT 2 cut(s) 436, 442
HpyCH4IV ACGT 2 cut(s) 42, 207
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 108, 164, 202, 373
HpyF3I CTNAG 2 cut(s) 362, 381
HpySE526I ACGT 2 cut(s) 42, 207
Hsp92I GRCGYC 1 cut(s) 194
HspAI GCGC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 4 cut(s) 73, 96, 177, 282
LmnI GCTCC 3 cut(s) 139, 297, 345
Lsp1109I GCAGC 3 cut(s) 264, 360, 363
MaeI CTAG 1 cut(s) 411
MaeII ACGT 2 cut(s) 42, 207
MaeIII GTNAC 1 cut(s) 436
MalI GATC 4 cut(s) 75, 98, 179, 284
MboI GATC 4 cut(s) 73, 96, 177, 282
MboII GAAGA 5 cut(s) 13, 37, 247, 328, 472
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 1 cut(s) 474
MspA1I CMGCKG 3 cut(s) 102, 288, 351
MspI CCGG 2 cut(s) 197, 227
MspR9I CCNGG 2 cut(s) 83, 228
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 2 cut(s) 116, 389
MwoI GCNNNNNNNGC 5 cut(s) 24, 108, 164, 202, 373
NciI CCSGG 1 cut(s) 228
NdeII GATC 4 cut(s) 73, 96, 177, 282
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 7 cut(s) 29, 104, 160, 279, 350, 353, 378
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 81
PspCI CACGTG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 128, 220
PspPPI RGGWCCY 1 cut(s) 128
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 73
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 7 cut(s) 28, 103, 159, 278, 349, 352, 377
Sau3AI GATC 4 cut(s) 73, 96, 177, 282
Sau96I GGNCC 2 cut(s) 128, 220
ScrFI CCNGG 2 cut(s) 83, 228
SduI GDGCHC 1 cut(s) 447
SetI ASST 9 cut(s) 45, 130, 144, 210, 225, 249, 261, 396, 405
SfcI CTRYAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 128, 220
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 81, 226
TaaI ACNGT 2 cut(s) 436, 442
TaiI ACGT 2 cut(s) 45, 210
TaqI TCGA 3 cut(s) 48, 63, 180
TaqII GACCGA 1 cut(s) 123
TauI GCSGC 4 cut(s) 30, 105, 161, 354
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 3 cut(s) 277, 348, 376
Tsp45I GTSAC 1 cut(s) 436
VpaK11BI GGWCC 2 cut(s) 128, 220
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.