FvH4_3g37330

kDa class I heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000537
Physical Location & Seq
Reverse (-)
32041218 .. 32041691
474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37330.t1

Sequence Viewer

Length: 474 bp
ATGTCGCTCATCCCCAGTTTCCGACGGAACAGCAACATCTTTGACCCTTTTCCCCTAGATCTCTGGGACCCTTTTAAGGATTTTCAGTTCCCTTCTTCATCGCTCTCTACTTTTTCTGACTTTTCTCGCGAAAACTCGGCCTTTGTCAACACTAGGATCGACTGGAAGGAGACCCCGGAAGCCCATGTGTTCAAGGCTGACATTCCAGGGCTGAAGAAAGAAGAGGTCAAGGTTGAGATTGAAGACGACAGGGTTCTTCAGATTAGTGGAGAGAGGAAGATAGAGGAGGACAAGAACGATACTTGGCACCGGGTCGAGCGTAGCAGCGGCAAGTTCTCCAGAAGGTTCAGGCTTCCTGAGAATGCTAAGGTAGATGAGATTAAGGCTGCTATGGAGAATGGGGTTCTCAGTGTGACGGTTCCTAAGGTGGAGGTGAAGAAGCCTGATGTCCAAGCCATTGAAATCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

158

Amino Acids

18.13

Weight (kDa)

5.35

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 54 - 155 8.3e-32 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 306
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 233, 242
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 3 cut(s) 193, 242, 461
AjnI CCWGG 1 cut(s) 205
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 324, 386
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 2 cut(s) 176, 311
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 423
BanI GGYRCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 336, 373
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 2 cut(s) 176, 311
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 56, 153
BglII AGATCT 1 cut(s) 58
BisI GCNGC 3 cut(s) 325, 328, 387
BlsI GCNGC 3 cut(s) 326, 329, 388
Bme1390I CCNGG 3 cut(s) 176, 207, 311
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 4 cut(s) 68, 69, 308, 420
BmrFI CCNGG 3 cut(s) 176, 207, 311
BmrI ACTGGG 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 176, 311
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 174, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 15, 167
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 174, 206
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 348, 421
BseNI ACTGG 2 cut(s) 15, 167
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 336, 373
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 176, 310
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 58, 156
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 349, 420
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 4 cut(s) 68, 69, 308, 420
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 2 cut(s) 15, 167
BssECI CCNNGG 2 cut(s) 174, 206
BssMI GATC 2 cut(s) 58, 156
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 357, 366, 407, 423
BstF5I GGATG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 2 cut(s) 61, 159
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 58, 156
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 3 cut(s) 174, 205, 309
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 336, 373
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 415
BtuMI TCGCGA 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 140, 182, 197, 211, 352, 386, 442, 455
CviKI_1 RGCY 8 cut(s) 140, 182, 197, 211, 352, 386, 442, 455
DdeI CTNAG 4 cut(s) 357, 366, 407, 423
DpnI GATC 2 cut(s) 60, 158
DpnII GATC 2 cut(s) 58, 156
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 233, 242
Eco81I CCTNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 188
FaiI YATR 2 cut(s) 186, 392
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 325, 328, 387
Fsp4HI GCNGC 3 cut(s) 325, 328, 387
FspBI CTAG 2 cut(s) 56, 153
GluI GCNGC 3 cut(s) 325, 328, 387
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 176, 310
Hin1II CATG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 2 cut(s) 176, 310
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 23, 118, 261
Hpy188III TCNNGA 3 cut(s) 128, 339, 356
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 102, 160, 336
HpyCH4III ACNGT 1 cut(s) 418
HpyF3I CTNAG 4 cut(s) 357, 366, 407, 423
Hsp92II CATG 1 cut(s) 188
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 58, 156
Lsp1109I GCAGC 2 cut(s) 336, 373
MaeI CTAG 2 cut(s) 56, 153
MaeIII GTNAC 1 cut(s) 412
MalI GATC 2 cut(s) 60, 158
MboI GATC 2 cut(s) 58, 156
MboII GAAGA 7 cut(s) 87, 226, 233, 248, 254, 289, 448
MflI RGATCY 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 217, 267, 277, 280, 424
MseI TTAA 3 cut(s) 75, 381, 472
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 2 cut(s) 176, 310
MspR9I CCNGG 3 cut(s) 176, 207, 311
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 129
NciI CCSGG 2 cut(s) 176, 311
NdeII GATC 2 cut(s) 58, 156
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 4 cut(s) 68, 69, 308, 420
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 412
NruI TCGCGA 1 cut(s) 129
PctI GAATGC 1 cut(s) 367
PkrI GCNGC 3 cut(s) 326, 329, 388
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 4 cut(s) 68, 69, 308, 420
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 1 cut(s) 58
RruI TCGCGA 1 cut(s) 129
SaqAI TTAA 3 cut(s) 75, 381, 472
SatI GCNGC 3 cut(s) 325, 328, 387
Sau3AI GATC 2 cut(s) 58, 156
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 176, 207, 311
SetI ASST 6 cut(s) 228, 234, 347, 372, 429, 435
SinI GGWCC 1 cut(s) 67
SsiI CCGC 1 cut(s) 327
SspMI CTAG 2 cut(s) 56, 153
StyD4I CCNGG 3 cut(s) 174, 205, 309
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 159, 315
TauI GCSGC 1 cut(s) 330
Tru1I TTAA 3 cut(s) 75, 381, 472
Tru9I TTAA 3 cut(s) 75, 381, 472
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 324, 386
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 67
XspI CTAG 2 cut(s) 56, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.