Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000537

Physical Location & Seq

Genomic Coordinates Reverse (-)

60611353 .. 60612215

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG331800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGCTGATTCCCAACCCATTCGGCCGCCGATTGGGCGCGTTCGACCCGTTCTCTCTTGACTCCGAAACGGCGTCGTTCGCCCACGCGCACATCGACTGGAAGGAGACGCCGACGGCGCACGTGTTCAAGGCCGACGTGCCTGGCCTGCGGAAGGACGAGGTCAAGGTGGAGGTGGAGGACGGCAAGATCCTCCAGATCAGCGGAGAGCGGAAGCGCGATGTGGAGGAGAAGACCGACACGTGGCACCGGGTGGAGCGCAGGCTGCGCAGCAGCGGCAGGTTCACGAGACGGTTCCGGCTGCCGGAGAATGCGAGAGTCGAGCAGGTCCAGGCGGCGATGGAGAACGGCGTCCTCACCGTCACGGTGCCTAAGGAGGAGGCCAAGAAGGTCGATGTCAGGTTGCTTGTGAAAGGTGCCGAAGCGACTCTTCTGGGCTTTCATGGTTGTGGCATGTCGAAACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009636 GO:0010033 GO:0010035 GO:0010038 GO:0042221 GO:0042493 GO:0042542 GO:0045471 GO:0046677 GO:0046685 GO:0046686 GO:0046688 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

156

Amino Acids

17.65

Weight (kDa)

8.76

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	33 - 130	8.2e-27	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07400 AT2G29500
fragaria_vesca	FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica	MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica	Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata	RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora	Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa	Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha	Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana	Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
Acc36I	ACCTGC	2 cut(s)	270, 316
AccB1I	GGYRCC	3 cut(s)	246, 367, 416
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	3 cut(s)	41, 89, 219
AciI	CCGC	6 cut(s)	28, 151, 204, 211, 276, 335
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	25
AcvI	CACGTG	2 cut(s)	124, 243
AcyI	GRCGYC	3 cut(s)	74, 110, 351
AdeI	CACNNNGTG	1 cut(s)	253
AfiI	CCNNNNNNNGG	4 cut(s)	34, 154, 243, 304
AflIII	ACRYGT	2 cut(s)	123, 240
AgsI	TTSAA	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	142, 330
Alw26I	GTCTC	2 cut(s)	101, 283
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	4 cut(s)	25, 132, 145, 381
ApeKI	GCWGC	4 cut(s)	265, 270, 273, 301
AspLEI	GCGC	6 cut(s)	41, 91, 121, 219, 261, 270
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	3 cut(s)	246, 367, 416
BauI	CACGAG	1 cut(s)	286
BbrPI	CACGTG	2 cut(s)	124, 243
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	252, 282, 285, 288
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	4 cut(s)	87, 132, 199, 364
BciT130I	CCWGG	2 cut(s)	144, 332
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	101, 283
BfuAI	ACCTGC	2 cut(s)	270, 316
BglI	GCCNNNNNGGC	1 cut(s)	36
BisI	GCNGC	7 cut(s)	28, 266, 271, 274, 277, 302, 336
BlsI	GCNGC	7 cut(s)	29, 267, 272, 275, 278, 303, 337
Bme1390I	CCNGG	3 cut(s)	144, 251, 332
Bme18I	GGWCC	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	4 cut(s)	248, 296, 369, 418
BmrFI	CCNGG	3 cut(s)	144, 251, 332
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	251
BsaAI	YACGTR	2 cut(s)	124, 243
BsaHI	GRCGYC	3 cut(s)	74, 110, 351
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 154, 243, 304
Bse1I	ACTGG	1 cut(s)	104
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	144, 332
BseLI	CCNNNNNNNGG	4 cut(s)	34, 154, 243, 304
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	2 cut(s)	242, 392
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	252, 282, 285, 288
Bsh1236I	CGCG	3 cut(s)	41, 89, 219
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	27, 134, 147, 383
BshNI	GGYRCC	3 cut(s)	246, 367, 416
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	250, 298, 305
BslI	CCNNNNNNNGG	4 cut(s)	34, 154, 243, 304
BsmAI	GTCTC	2 cut(s)	101, 283
BsmBI	CGTCTC	2 cut(s)	101, 283
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	4 cut(s)	27, 134, 147, 383
Bsp143I	GATC	2 cut(s)	189, 198
BspACI	CCGC	6 cut(s)	28, 151, 204, 211, 276, 335
BspANI	GGCC	4 cut(s)	27, 134, 147, 383
BspFNI	CGCG	3 cut(s)	41, 89, 219
BspLI	GGNNCC	4 cut(s)	248, 296, 369, 418
BspMI	ACCTGC	2 cut(s)	270, 316
BspPI	GGATC	1 cut(s)	184
BspT107I	GGYRCC	3 cut(s)	246, 367, 416
BsrBI	CCGCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	189, 198
BssNI	GRCGYC	3 cut(s)	74, 110, 351
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	144, 332
Bst4CI	ACNGT	3 cut(s)	294, 361, 367
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	3 cut(s)	74, 110, 351
BstBAI	YACGTR	2 cut(s)	124, 243
BstC8I	GCNNGC	2 cut(s)	149, 263
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstFNI	CGCG	3 cut(s)	41, 89, 219
BstHHI	GCGC	6 cut(s)	41, 91, 121, 219, 261, 270
BstKTI	GATC	2 cut(s)	192, 201
BstMAI	GTCTC	2 cut(s)	101, 283
BstMBI	GATC	2 cut(s)	189, 198
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 80, 118, 148, 265, 267, 276
BstNI	CCWGG	2 cut(s)	144, 332
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	142, 249, 330
BstUI	CGCG	3 cut(s)	41, 89, 219
BstV1I	GCAGC	4 cut(s)	252, 282, 285, 288
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BstZI	CGGCCG	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	27, 134, 147, 383
BtgZI	GCGATG	2 cut(s)	234, 353
BtrI	CACGTC	1 cut(s)	139
BveI	ACCTGC	2 cut(s)	270, 316
Cac8I	GCNNGC	2 cut(s)	149, 263
CfoI	GCGC	6 cut(s)	41, 91, 121, 219, 261, 270
Cfr13I	GGNCC	1 cut(s)	328
CseI	GACGC	3 cut(s)	63, 118, 340
CviAII	CATG	2 cut(s)	443, 454
CviJI	RGCY	7 cut(s)	27, 134, 147, 265, 301, 383, 438
CviKI_1	RGCY	7 cut(s)	27, 134, 147, 265, 301, 383, 438
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	191, 200
DpnII	GATC	2 cut(s)	189, 198
DraIII	CACNNNGTG	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	328
Eco52I	CGGCCG	1 cut(s)	25
Eco72I	CACGTG	2 cut(s)	124, 243
Eco81I	CCTNAGG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	142, 330
Esp3I	CGTCTC	2 cut(s)	101, 283
FaeI	CATG	2 cut(s)	446, 457
FaiI	YATR	2 cut(s)	444, 455
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	2 cut(s)	442, 453
Fnu4HI	GCNGC	7 cut(s)	28, 266, 271, 274, 277, 302, 336
Fsp4HI	GCNGC	7 cut(s)	28, 266, 271, 274, 277, 302, 336
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	6 cut(s)	40, 90, 120, 218, 260, 269
GluI	GCNGC	7 cut(s)	28, 266, 271, 274, 277, 302, 336
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	4 cut(s)	27, 134, 147, 383
HapII	CCGG	3 cut(s)	250, 298, 305
HgaI	GACGC	3 cut(s)	63, 118, 340
HhaI	GCGC	6 cut(s)	41, 91, 121, 219, 261, 270
Hin1I	GRCGYC	3 cut(s)	74, 110, 351
Hin1II	CATG	2 cut(s)	446, 457
Hin6I	GCGC	6 cut(s)	39, 89, 119, 217, 259, 268
HinP1I	GCGC	6 cut(s)	39, 89, 119, 217, 259, 268
HinfI	GANTC	4 cut(s)	10, 62, 318, 427
HpaII	CCGG	3 cut(s)	250, 298, 305
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	59, 196, 286
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	3 cut(s)	79, 118, 140
HpyAV	CCTTC	3 cut(s)	97, 148, 382
HpyCH4III	ACNGT	3 cut(s)	294, 361, 367
HpyCH4IV	ACGT	3 cut(s)	123, 138, 242
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 80, 118, 148, 265, 267, 276
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	3 cut(s)	123, 138, 242
Hsp92I	GRCGYC	3 cut(s)	74, 110, 351
Hsp92II	CATG	2 cut(s)	446, 457
HspAI	GCGC	6 cut(s)	39, 89, 119, 217, 259, 268
Kzo9I	GATC	2 cut(s)	189, 198
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	4 cut(s)	252, 282, 285, 288
MaeII	ACGT	3 cut(s)	123, 138, 242
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	191, 200
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	2 cut(s)	189, 198
MboII	GAAGA	2 cut(s)	244, 422
MflI	RGATCY	1 cut(s)	189
MlyI	GAGTC	3 cut(s)	56, 327, 421
MnlI	CCTC	8 cut(s)	154, 166, 172, 203, 220, 365, 370, 373
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	2 cut(s)	204, 276
MspI	CCGG	3 cut(s)	250, 298, 305
MspR9I	CCNGG	3 cut(s)	144, 251, 332
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	2 cut(s)	144, 332
MvnI	CGCG	3 cut(s)	41, 89, 219
MwoI	GCNNNNNNNGC	7 cut(s)	36, 80, 118, 148, 265, 267, 276
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	189, 198
NlaIII	CATG	2 cut(s)	446, 457
NlaIV	GGNNCC	4 cut(s)	248, 296, 369, 418
NmuCI	GTSAC	1 cut(s)	361
NsbI	TGCGCA	1 cut(s)	269
NspI	RCATGY	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	7 cut(s)	29, 267, 272, 275, 278, 303, 337
PleI	GAGTC	3 cut(s)	56, 326, 421
PmaCI	CACGTG	2 cut(s)	124, 243
PmlI	CACGTG	2 cut(s)	124, 243
PpsI	GAGTC	3 cut(s)	56, 326, 421
Ppu21I	YACGTR	2 cut(s)	124, 243
Psp6I	CCWGG	2 cut(s)	142, 330
PspCI	CACGTG	2 cut(s)	124, 243
PspGI	CCWGG	2 cut(s)	142, 330
PspN4I	GGNNCC	4 cut(s)	248, 296, 369, 418
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	7 cut(s)	28, 266, 271, 274, 277, 302, 336
Sau3AI	GATC	2 cut(s)	189, 198
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	3 cut(s)	56, 327, 421
ScrFI	CCNGG	3 cut(s)	144, 251, 332
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	447
SsiI	CCGC	6 cut(s)	28, 151, 204, 211, 276, 335
StyD4I	CCNGG	3 cut(s)	142, 249, 330
TaaI	ACNGT	3 cut(s)	294, 361, 367
TaiI	ACGT	3 cut(s)	126, 141, 245
TaqI	TCGA	5 cut(s)	45, 96, 321, 393, 458
TaqII	GACCGA	1 cut(s)	251
TauI	GCSGC	3 cut(s)	30, 279, 338
TfiI	GAWTC	1 cut(s)	10
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	265, 270, 273, 301
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.