Rroxscaffold_4G00288090

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000537
Physical Location & Seq
Forward (+)
8989805 .. 8990275
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288090.1

Sequence Viewer

Length: 471 bp
ATGTCGCTGATTCCCAACCCATTCGACCGCCGATCGGGCCTGTTCGACCCGTTCTCTCTTGACGTGTGGGACCACCACCATCCACTGGACCCCTGGCTCTTCCGCTCCGTCTCGTCGCAGTCCGAAACGGCGTCGTTCGCCCACGCGCACATCGACTGGAAGGAGACGCCGACGGCGCACGTGTTCAAGGCCGACGTGCCGGGCCTGCGGAAGGACGAGGTCAAGGTGGAGGTGGAGGACGGCAAGATCCTCCAGATCAGCGGAGAGCGGAAGCGCGATGAGGAGGAGAAGACCGACACGTGGCACCGGGTGGAGCGCAGCAGTGGCAGGTTCACGAGGCGGTTCCGGCTGCCGGAGAATGCGAGAGTCGAGCAGGTCCAGGCGGCGATGGAGAACGGCGTCCTCACCGTCACGGTGCCTAAGGAGGAGGCCAAGAAGGTCGATGTCAGGTCAATTGAGATTTCTGGTTAA

Protein Analysis

156

Amino Acids

17.97

Weight (kDa)

5.98

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 52 - 155 1.8e-31 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 318, 364
AccB1I GGYRCC 2 cut(s) 303, 415
AccB7I CCANNNNNTGG 1 cut(s) 85
AccBSI CCGCTC 2 cut(s) 105, 268
AccII CGCG 2 cut(s) 146, 276
AciI CCGC 7 cut(s) 28, 103, 208, 261, 268, 340, 383
AclWI GGATC 1 cut(s) 241
AcvI CACGTG 2 cut(s) 181, 300
AcyI GRCGYC 3 cut(s) 131, 167, 399
AdeI CACNNNGTG 1 cut(s) 310
AfiI CCNNNNNNNGG 5 cut(s) 34, 85, 211, 300, 352
AflIII ACRYGT 3 cut(s) 63, 180, 297
AgsI TTSAA 1 cut(s) 187
AjiI CACGTC 2 cut(s) 64, 196
AjnI CCWGG 2 cut(s) 92, 378
Alw26I GTCTC 2 cut(s) 115, 158
AlwI GGATC 1 cut(s) 241
AoxI GGCC 4 cut(s) 37, 189, 202, 429
ApeKI GCWGC 2 cut(s) 318, 349
AspLEI GCGC 4 cut(s) 148, 178, 276, 318
AspS9I GGNCC 5 cut(s) 37, 70, 88, 202, 376
AsuC2I CCSGG 2 cut(s) 201, 308
AsuHPI GGTGA 1 cut(s) 397
AvaII GGWCC 3 cut(s) 70, 88, 376
AxyI CCTNAGG 1 cut(s) 420
BanI GGYRCC 2 cut(s) 303, 415
BauI CACGAG 1 cut(s) 334
BbrPI CACGTG 2 cut(s) 181, 300
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 330, 336
BccI CCATC 2 cut(s) 87, 382
BceAI ACGGC 4 cut(s) 144, 189, 256, 412
BciT130I CCWGG 2 cut(s) 94, 380
BcnI CCSGG 2 cut(s) 201, 308
BcoDI GTCTC 2 cut(s) 115, 158
BfuAI ACCTGC 2 cut(s) 318, 364
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 3 cut(s) 319, 350, 384
BlsI GCNGC 3 cut(s) 320, 351, 385
Bme1390I CCNGG 4 cut(s) 94, 201, 308, 380
Bme18I GGWCC 3 cut(s) 70, 88, 376
BmgBI CACGTC 2 cut(s) 64, 196
BmgT120I GGNCC 5 cut(s) 37, 70, 88, 202, 376
BmiI GGNNCC 5 cut(s) 71, 90, 305, 344, 417
BmrFI CCNGG 4 cut(s) 94, 201, 308, 380
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 201, 308
BsaAI YACGTR 2 cut(s) 181, 300
BsaHI GRCGYC 3 cut(s) 131, 167, 399
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 85, 211, 300, 352
Bse1I ACTGG 2 cut(s) 90, 161
Bse21I CCTNAGG 1 cut(s) 420
BseBI CCWGG 2 cut(s) 94, 380
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 5 cut(s) 34, 85, 211, 300, 352
BseNI ACTGG 2 cut(s) 90, 161
BseRI GAGGAG 3 cut(s) 296, 299, 440
BseXI GCAGC 2 cut(s) 330, 336
Bsh1236I CGCG 2 cut(s) 146, 276
Bsh1285I CGRYCG 2 cut(s) 28, 35
BshFI GGCC 4 cut(s) 39, 191, 204, 431
BshNI GGYRCC 2 cut(s) 303, 415
BsiEI CGRYCG 2 cut(s) 28, 35
BsiSI CCGG 4 cut(s) 200, 307, 346, 353
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 5 cut(s) 34, 85, 211, 300, 352
BsmAI GTCTC 2 cut(s) 115, 158
BsmBI CGTCTC 2 cut(s) 115, 158
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 4 cut(s) 39, 191, 204, 431
Bsp143I GATC 3 cut(s) 32, 246, 255
BspACI CCGC 7 cut(s) 28, 103, 208, 261, 268, 340, 383
BspANI GGCC 4 cut(s) 39, 191, 204, 431
BspFNI CGCG 2 cut(s) 146, 276
BspLI GGNNCC 5 cut(s) 71, 90, 305, 344, 417
BspMI ACCTGC 2 cut(s) 318, 364
BspPI GGATC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 2 cut(s) 303, 415
BsrBI CCGCTC 2 cut(s) 105, 268
BsrI ACTGG 2 cut(s) 90, 161
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 3 cut(s) 32, 246, 255
BssNI GRCGYC 3 cut(s) 131, 167, 399
BssSI CACGAG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 2 cut(s) 94, 380
Bst4CI ACNGT 2 cut(s) 409, 415
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 3 cut(s) 131, 167, 399
BstBAI YACGTR 2 cut(s) 181, 300
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 420
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 146, 276
BstHHI GCGC 4 cut(s) 148, 178, 276, 318
BstKTI GATC 3 cut(s) 35, 249, 258
BstMAI GTCTC 2 cut(s) 115, 158
BstMBI GATC 3 cut(s) 32, 246, 255
BstMCI CGRYCG 2 cut(s) 28, 35
BstMWI GCNNNNNNNGC 6 cut(s) 36, 137, 175, 205, 324, 346
BstNI CCWGG 2 cut(s) 94, 380
BstSCI CCNGG 4 cut(s) 92, 199, 306, 378
BstUI CGCG 2 cut(s) 146, 276
BstV1I GCAGC 2 cut(s) 330, 336
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 4 cut(s) 39, 191, 204, 431
BtgZI GCGATG 2 cut(s) 291, 401
BtrI CACGTC 2 cut(s) 64, 196
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 83, 328
BveI ACCTGC 2 cut(s) 318, 364
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 4 cut(s) 148, 178, 276, 318
Cfr13I GGNCC 5 cut(s) 37, 70, 88, 202, 376
CseI GACGC 3 cut(s) 120, 175, 388
CviJI RGCY 6 cut(s) 39, 97, 191, 204, 349, 431
CviKI_1 RGCY 6 cut(s) 39, 97, 191, 204, 349, 431
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 34, 248, 257
DpnII GATC 3 cut(s) 32, 246, 255
DraIII CACNNNGTG 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco47I GGWCC 3 cut(s) 70, 88, 376
Eco72I CACGTG 2 cut(s) 181, 300
Eco81I CCTNAGG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 92, 378
Esp3I CGTCTC 2 cut(s) 115, 158
FaqI GGGAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 319, 350, 384
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 319, 350, 384
GlaI GCGC 4 cut(s) 147, 177, 275, 317
GluI GCNGC 3 cut(s) 319, 350, 384
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 4 cut(s) 39, 191, 204, 431
HapII CCGG 4 cut(s) 200, 307, 346, 353
HgaI GACGC 3 cut(s) 120, 175, 388
HhaI GCGC 4 cut(s) 148, 178, 276, 318
Hin1I GRCGYC 3 cut(s) 131, 167, 399
Hin6I GCGC 4 cut(s) 146, 176, 274, 316
HinP1I GCGC 4 cut(s) 146, 176, 274, 316
HinfI GANTC 2 cut(s) 10, 366
HpaII CCGG 4 cut(s) 200, 307, 346, 353
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 59, 253, 334
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 4 cut(s) 118, 136, 175, 197
HpyAV CCTTC 3 cut(s) 154, 205, 430
HpyCH4III ACNGT 2 cut(s) 409, 415
HpyCH4IV ACGT 4 cut(s) 63, 180, 195, 299
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 137, 175, 205, 324, 346
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 4 cut(s) 63, 180, 195, 299
Hsp92I GRCGYC 3 cut(s) 131, 167, 399
HspAI GCGC 4 cut(s) 146, 176, 274, 316
Kzo9I GATC 3 cut(s) 32, 246, 255
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 110, 313
Lsp1109I GCAGC 2 cut(s) 330, 336
MaeII ACGT 4 cut(s) 63, 180, 195, 299
MaeIII GTNAC 1 cut(s) 409
MalI GATC 3 cut(s) 34, 248, 257
MbiI CCGCTC 2 cut(s) 105, 268
MboI GATC 3 cut(s) 32, 246, 255
MboII GAAGA 2 cut(s) 91, 301
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 246
MluCI AATT 1 cut(s) 453
MlyI GAGTC 1 cut(s) 375
MseI TTAA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 4 cut(s) 200, 307, 346, 353
MspR9I CCNGG 4 cut(s) 94, 201, 308, 380
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 94, 380
MvnI CGCG 2 cut(s) 146, 276
MwoI GCNNNNNNNGC 6 cut(s) 36, 137, 175, 205, 324, 346
NciI CCSGG 2 cut(s) 201, 308
NdeII GATC 3 cut(s) 32, 246, 255
NlaIV GGNNCC 5 cut(s) 71, 90, 305, 344, 417
NmuCI GTSAC 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 3 cut(s) 320, 351, 385
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 1 cut(s) 374
PmaCI CACGTG 2 cut(s) 181, 300
PmlI CACGTG 2 cut(s) 181, 300
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 2 cut(s) 181, 300
Psp6I CCWGG 2 cut(s) 92, 378
PspCI CACGTG 2 cut(s) 181, 300
PspGI CCWGG 2 cut(s) 92, 378
PspN4I GGNNCC 5 cut(s) 71, 90, 305, 344, 417
PspPI GGNCC 5 cut(s) 37, 70, 88, 202, 376
PsuI RGATCY 1 cut(s) 246
PsyI GACNNNGTC 1 cut(s) 218
PvuI CGATCG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 3 cut(s) 319, 350, 384
Sau3AI GATC 3 cut(s) 32, 246, 255
Sau96I GGNCC 5 cut(s) 37, 70, 88, 202, 376
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 4 cut(s) 94, 201, 308, 380
SinI GGWCC 3 cut(s) 70, 88, 376
Sse9I AATT 1 cut(s) 453
SsiI CCGC 7 cut(s) 28, 103, 208, 261, 268, 340, 383
StyD4I CCNGG 4 cut(s) 92, 199, 306, 378
TaaI ACNGT 2 cut(s) 409, 415
TaiI ACGT 4 cut(s) 66, 183, 198, 302
TaqI TCGA 5 cut(s) 24, 45, 153, 369, 441
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 453
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 2 cut(s) 90, 328
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 318, 349
Tsp45I GTSAC 1 cut(s) 409
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 90, 328
Tth111I GACNNNGTC 1 cut(s) 218
Van91I CCANNNNNTGG 1 cut(s) 85
VpaK11BI GGWCC 3 cut(s) 70, 88, 376
XagI CCTNNNNNAGG 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.