Rorug04G0353900

Hsp20/alpha crystallin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
52610764 .. 52613472
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0353900.1

Sequence Viewer

Length: 1167 bp
ATGGCCACCTTCTCAACTCTAGCCTACTTCCCCATTACAATTAGGTTCTCCTGGAATAGGGCCAGCAGTTATGATCCGAACAAGAAGAGCCTGAACAACATCAAGATTAATGGTACTTCAACAAAGTCCACAACCCAGCTTGACATGGCAAGCGCTTTAACCTCAGTTGCTTACATTAGTGAACAGCAAGTTCGACAGAATATTCCGACAACCAAGCAGTTTGTTGATCATTATCGCCAAGGGATGATCATCGAAGGTGGTGTAGGGTACAGACAGAGGGTGGTTATTAGGTCTTATGAAGTCGGTCCTGATAAAACTGTAACATTGGAGAGCATCCTTAATCTTCTGCAGGAAACAGCATTGAATCATGTGTGGATGTCAGGACTCCTCAGTGATGGGTTTGGAGCAACTCATGGAATGATGAAGCATGATCTCATATGGGTTGTGTCAAGAATGCAAGTTGAAGTTGATCACTATCCAATCTGGGGAGAAGTATTGGAAATTGACACTTGGGTTGGGGCATCAGGGAAGAATGGTATGCGTCGAGACTGGTTAATCCGAAGTGAAGCCACAGGTCATGTTTTTGCTAGTGCAACCAGCACCTGGGTGATGATGAACCGAACAACAAGACGCCTCTCAAAAATGCCAGAAGAAGTGAGAGCTGAGATTGCACCTTGGTTTATAGAGAAGCAAGCAATCACAGAAGATGTCCTAGAGAAAATTGTCAAATTGGACAACAAAGCCAAGTACATGAACAACGACTTGAAGCCCAAGAGAAGCGACTTGGACATGAACCAGCATGTCAACAATGTCAAGTATGTGAGGTGGATGCTTGAGACCATCCCTGACCAAATTTTAGAGGCTCATCAACTGACAAGCATCATCCTAGAATATAGAAGGGAGTGTGGGAGCTCAGATATAGTTCAATCACTGTGCCAACCCGATGAAGACGGCATTCTCAAAGATGGACTGAAACAAGATAAAGAAACCAGTCTCGTAAATGGGTTTTCCTTGGCAGCTGAGATTCTGGAGGGTAATGGATTCCTTGCATCCTTTGGCAACCAAAAATTACGGTATACACATCTCCTTAAAATTGATGGGGAGTCCCAAAATGACGAGATTGTTAGAGGAAGAACTACATGGAAGAAGAAGTCCTTTTCGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

44.21

Weight (kDa)

7.14

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 89 - 223 5.8e-34 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 247 - 335 2.8e-23 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 603
AccI GTMKAC 1 cut(s) 1076
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 631
AfaI GTAC 3 cut(s) 115, 269, 749
AfeI AGCGCT 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 57, 485, 603
AgsI TTSAA 5 cut(s) 120, 364, 464, 766, 926
AjnI CCWGG 2 cut(s) 50, 602
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 4 cut(s) 139, 662, 912, 1019
AluI AGCT 4 cut(s) 139, 662, 912, 1019
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 3 cut(s) 540, 830, 998
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 603
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 2 cut(s) 3, 60
ApeKI GCWGC 1 cut(s) 1016
ApoI RAATTY 1 cut(s) 852
AseI ATTAAT 1 cut(s) 108
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 60, 305
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 954
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 1 cut(s) 1028
BccI CCATC 4 cut(s) 389, 848, 959, 1091
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 2 cut(s) 52, 604
BclI TGATCA 3 cut(s) 226, 246, 469
BcoDI GTCTC 3 cut(s) 540, 830, 998
BfaI CTAG 4 cut(s) 20, 588, 713, 887
BfmI CTRYAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 1 cut(s) 1017
BlsI GCNGC 1 cut(s) 1018
Bme1390I CCNGG 2 cut(s) 52, 604
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 60, 305
BmrFI CCNGG 2 cut(s) 52, 604
BmsI GCATC 5 cut(s) 342, 530, 819, 888, 1058
BpiI GAAGAC 1 cut(s) 954
BpmI CTGGAG 1 cut(s) 1049
BpuEI CTTGAG 1 cut(s) 854
BsaBI GATNNNNATC 3 cut(s) 231, 248, 474
BsaHI GRCGYC 1 cut(s) 631
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 4 cut(s) 238, 603, 674, 1011
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 485, 603
Bse1I ACTGG 2 cut(s) 554, 990
Bse8I GATNNNNATC 3 cut(s) 231, 248, 474
BseBI CCWGG 2 cut(s) 52, 604
BseDI CCNNGG 4 cut(s) 238, 603, 674, 1011
BseGI GGATG 7 cut(s) 249, 333, 381, 834, 840, 882, 1049
BseJI GATNNNNATC 3 cut(s) 231, 248, 474
BseLI CCNNNNNNNGG 3 cut(s) 57, 485, 603
BseMII CTCAG 5 cut(s) 177, 403, 654, 927, 1011
BseNI ACTGG 2 cut(s) 554, 990
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 1028
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 2 cut(s) 5, 62
BsiHKAI GWGCWC 1 cut(s) 914
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 3 cut(s) 57, 485, 603
BsmAI GTCTC 3 cut(s) 540, 830, 998
BsmFI GGGAC 1 cut(s) 1090
BsmI GAATGC 2 cut(s) 459, 954
BsnI GGCC 2 cut(s) 5, 62
Bso31I GGTCTC 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 5 cut(s) 73, 226, 246, 430, 469
BspANI GGCC 2 cut(s) 5, 62
BspCNI CTCAG 5 cut(s) 176, 402, 655, 926, 1012
BspMAI CTGCAG 1 cut(s) 351
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 830
BsrI ACTGG 2 cut(s) 554, 990
BssECI CCNNGG 4 cut(s) 238, 603, 674, 1011
BssMI GATC 5 cut(s) 73, 226, 246, 430, 469
BssNAI GTATAC 1 cut(s) 1077
BssNI GRCGYC 1 cut(s) 631
BssT1I CCWWGG 3 cut(s) 238, 674, 1011
Bst1107I GTATAC 1 cut(s) 1077
Bst2UI CCWGG 2 cut(s) 52, 604
Bst4CI ACNGT 3 cut(s) 319, 933, 1074
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 631
BstC8I GCNNGC 3 cut(s) 64, 151, 693
BstDEI CTNAG 5 cut(s) 163, 389, 663, 913, 1020
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 7 cut(s) 249, 333, 381, 834, 840, 882, 1049
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 5 cut(s) 76, 229, 249, 433, 472
BstMAI GTCTC 3 cut(s) 540, 830, 998
BstMBI GATC 5 cut(s) 73, 226, 246, 430, 469
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 2 cut(s) 52, 604
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 50, 602
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 1028
BstV2I GAAGAC 1 cut(s) 954
BstZ17I GTATAC 1 cut(s) 1077
BsuRI GGCC 2 cut(s) 5, 62
BtsCI GGATG 7 cut(s) 249, 333, 381, 834, 840, 882, 1049
BtsIMutI CAGTG 2 cut(s) 397, 929
Cac8I GCNNGC 3 cut(s) 64, 151, 693
CaiI CAGNNNCTG 1 cut(s) 603
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 60, 305
CseI GACGC 2 cut(s) 530, 639
Csp6I GTAC 3 cut(s) 114, 268, 748
CviAII CATG 9 cut(s) 145, 368, 413, 428, 578, 751, 790, 800, 1140
CviQI GTAC 3 cut(s) 114, 268, 748
DdeI CTNAG 5 cut(s) 163, 389, 663, 913, 1020
DpnI GATC 5 cut(s) 75, 228, 248, 432, 471
DpnII GATC 5 cut(s) 73, 226, 246, 430, 469
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 912
Eco130I CCWWGG 3 cut(s) 238, 674, 1011
Eco24I GRGCYC 1 cut(s) 914
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 1 cut(s) 305
Eco47III AGCGCT 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 912
EcoICRI GAGCTC 1 cut(s) 912
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 50, 602
EcoT14I CCWWGG 3 cut(s) 238, 674, 1011
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 3 cut(s) 238, 674, 1011
FaeI CATG 9 cut(s) 148, 371, 416, 431, 581, 754, 793, 803, 1143
FalI AAGNNNNNCTT 1 cut(s) 1139
FaqI GGGAC 1 cut(s) 1090
FatI CATG 9 cut(s) 144, 367, 412, 427, 577, 750, 789, 799, 1139
FauNDI CATATG 1 cut(s) 437
FbaI TGATCA 3 cut(s) 226, 246, 469
FblI GTMKAC 1 cut(s) 1076
Fnu4HI GCNGC 1 cut(s) 1017
FokI GGATG 7 cut(s) 256, 320, 388, 827, 841, 869, 1036
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 1 cut(s) 1017
FspBI CTAG 4 cut(s) 20, 588, 713, 887
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 1017
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 1049
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 5, 62
HgaI GACGC 2 cut(s) 530, 639
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 631
Hin1II CATG 9 cut(s) 148, 371, 416, 431, 581, 754, 793, 803, 1143
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 5 cut(s) 364, 384, 1024, 1041, 1103
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 4 cut(s) 129, 182, 805, 1077
Hpy188I TCNGA 4 cut(s) 78, 207, 560, 916
Hpy188III TCNNGA 6 cut(s) 103, 308, 381, 450, 545, 1028
Hpy8I GTNNAC 4 cut(s) 129, 182, 805, 1077
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 3 cut(s) 19, 248, 891
HpyCH4III ACNGT 3 cut(s) 319, 933, 1074
HpyCH4V TGCA 5 cut(s) 349, 457, 593, 671, 1049
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 5 cut(s) 163, 389, 663, 913, 1020
Hsp92I GRCGYC 1 cut(s) 631
Hsp92II CATG 9 cut(s) 148, 371, 416, 431, 581, 754, 793, 803, 1143
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 3 cut(s) 226, 246, 469
Kzo9I GATC 5 cut(s) 73, 226, 246, 430, 469
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 404, 909
Lsp1109I GCAGC 1 cut(s) 1028
LweI GCATC 5 cut(s) 342, 530, 819, 888, 1058
MaeI CTAG 4 cut(s) 20, 588, 713, 887
MaeIII GTNAC 1 cut(s) 319
MalI GATC 5 cut(s) 75, 228, 248, 432, 471
MboI GATC 5 cut(s) 73, 226, 246, 430, 469
MboII GAAGA 9 cut(s) 97, 335, 541, 662, 716, 959, 1143, 1156, 1159
MhlI GDGCHC 1 cut(s) 914
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 39, 501, 720, 728, 852, 1067, 1092
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 378, 1112
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 8 cut(s) 172, 270, 398, 644, 816, 853, 1024, 1121
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 108, 158, 339, 554, 1089
MslI CAYNNNNRTG 1 cut(s) 605
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1019
MspR9I CCNGG 2 cut(s) 52, 604
Mva1269I GAATGC 2 cut(s) 459, 954
MvaI CCWGG 2 cut(s) 52, 604
MwoI GCNNNNNNNGC 1 cut(s) 668
NdeI CATATG 1 cut(s) 437
NdeII GATC 5 cut(s) 73, 226, 246, 430, 469
NlaIII CATG 9 cut(s) 148, 371, 416, 431, 581, 754, 793, 803, 1143
NspI RCATGY 1 cut(s) 803
OliI CACNNNNGTG 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 2 cut(s) 459, 954
PfeI GAWTC 3 cut(s) 364, 1024, 1041
PflMI CCANNNNNTGG 1 cut(s) 603
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 1 cut(s) 1018
PleI GAGTC 2 cut(s) 378, 1111
PpsI GAGTC 2 cut(s) 378, 1111
PshBI ATTAAT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 914
Psp6I CCWGG 2 cut(s) 50, 602
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 50, 602
PspPI GGNCC 2 cut(s) 60, 305
PstI CTGCAG 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 603
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 3 cut(s) 115, 269, 749
RsaNI GTAC 3 cut(s) 114, 268, 748
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 5 cut(s) 108, 158, 339, 554, 1089
SatI GCNGC 1 cut(s) 1017
Sau3AI GATC 5 cut(s) 73, 226, 246, 430, 469
Sau96I GGNCC 2 cut(s) 60, 305
SchI GAGTC 2 cut(s) 378, 1112
ScrFI CCNGG 2 cut(s) 52, 604
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 5 cut(s) 342, 530, 819, 888, 1058
SfcI CTRYAG 1 cut(s) 347
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 7 cut(s) 39, 501, 720, 728, 852, 1067, 1092
SspI AATATT 1 cut(s) 202
SspMI CTAG 4 cut(s) 20, 588, 713, 887
SstI GAGCTC 1 cut(s) 914
StyD4I CCNGG 2 cut(s) 50, 602
StyI CCWWGG 3 cut(s) 238, 674, 1011
TaaI ACNGT 3 cut(s) 319, 933, 1074
TaqI TCGA 3 cut(s) 193, 252, 544
TaqII GACCGA 1 cut(s) 293
TasI AATT 7 cut(s) 39, 501, 720, 728, 852, 1067, 1092
TatI WGTACW 1 cut(s) 747
TfiI GAWTC 3 cut(s) 364, 1024, 1041
Tru1I TTAA 5 cut(s) 108, 158, 339, 554, 1089
Tru9I TTAA 5 cut(s) 108, 158, 339, 554, 1089
TscAI CASTG 2 cut(s) 397, 936
TseI GCWGC 1 cut(s) 1016
TspDTI ATGAA 6 cut(s) 312, 437, 629, 767, 806, 960
TspRI CASTG 2 cut(s) 397, 936
Van91I CCANNNNNTGG 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 305
VspI ATTAAT 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 852
XceI RCATGY 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 1076
XspI CTAG 4 cut(s) 20, 588, 713, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.