Rorug05G0382600

kDa class I heat shock protein-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
51869127 .. 51872185
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0382600.1

Sequence Viewer

Length: 1050 bp
ATGGATAGGAATGGGATTCGAGAGTCCTTGCTTCCAGGGCTCGTAGATCCTTCACCTCAAAAAAAGACAAAGAATGTTCCAAAGAGTAGAGGATTTCGCCGTTGTAAAAGTGCTCCTCTTGCTGAGCATGCACCTCTAGGGGCAAACCGCATTGACTCAGTTCAACGCTCTGAATCTATTATACACCCGAGTTTTGTTAAAGTAGCTATATTCTTGACTGTCTACGTAGGATTGGGAACTATATGCTTCTACCTCGTCAGGCACCAGATCGAGGGAGTGAAGACAAATGGAATTCTTGATGCTGTTTATTTCTGTATTGTGACAATGACTACTCTCGGATATGGAGACCTAGTGCCTGACAGCACTCTAGCGAAACTACTGGCCTGTGCTTTTGGCTTCACAGGAATGGCTCTCGTTGGATTGATCTTGACCAAAGCAGCAGACTATTTGGTAGAGAAACAAGAAATATTGCTTACGAAAGCCTTGCATGTGCATCCGAAATTTGGTCAAACTGACGTCCTTAAAGAAGTTGAGACTAATAATATGAGGTACAAATGTATTACAGTCTTCATCCTTCTTTTGGTACTTATGATTTCTGGCACGATCTTCCTAGCTACTGTTGAGAAATTGGACCTTGTGGATGCATTTTATTGCGTTTGTTCCACTATCACAACCCTGGGATATGGAGATAAGAGCTTCTCAACTGAAGCTGGGCGTGTTTTTGCGGTTTTCTGGATATTGACAAGTACTATCTGTTTAGCTCAGTTTTTGCTCTACATTGCCGAGCTAAACACCCAGCATAAACAAAGGGCACTGGTTAAATTTGTTCTCACTCGTGCGATGACCAACGTAGATTTGGAGGCAGCCGATCTTGATGATGATGGGGTTGTTGGGGCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGGAAGATTAATCAAGAAGATATTAGACTTGTAATGGAGGAGTTTGATGCTCTTGATGTTGATCAGTCTGGAGCCTTGTCGGTTTCAGATCTAACACTTGCTCAATCATCTCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

349

Amino Acids

38.4

Weight (kDa)

5.91

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 71 - 151 4.4e-17 Ion channel
Ion_trans_2 PF07885 191 - 264 6.1e-16 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 222
AciI CCGC 2 cut(s) 148, 725
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 3 cut(s) 291, 500, 821
AcuI CTGAAG 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 3 cut(s) 551, 585, 748
AfiI CCNNNNNNNGG 3 cut(s) 271, 503, 580
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 2 cut(s) 34, 675
AluBI AGCT 6 cut(s) 206, 614, 696, 710, 761, 787
AluI AGCT 6 cut(s) 206, 614, 696, 710, 761, 787
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 339, 527
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 437, 863, 896
ApoI RAATTY 3 cut(s) 291, 500, 821
AseI ATTAAT 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 814
BaeI ACNNNNGTAYC 2 cut(s) 541, 574
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 2 cut(s) 287, 559
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 449, 875, 883
BccI CCATC 2 cut(s) 875, 922
BceAI ACGGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 2 cut(s) 36, 677
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 2 cut(s) 339, 527
BfaI CTAG 4 cut(s) 137, 350, 368, 611
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 3 cut(s) 438, 864, 897
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 3 cut(s) 439, 865, 898
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 2 cut(s) 36, 677
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 2 cut(s) 263, 1003
BmrFI CCNGG 2 cut(s) 36, 677
BmsI GCATC 4 cut(s) 289, 502, 631, 967
BpiI GAAGAC 2 cut(s) 287, 559
BpmI CTGGAG 1 cut(s) 1020
Bpu1102I GCTNAGC 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 990
BsaHI GRCGYC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 35, 675, 676
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 503, 580
Bse1I ACTGG 2 cut(s) 384, 819
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 36, 677
BseDI CCNNGG 3 cut(s) 35, 675, 676
BseGI GGATG 3 cut(s) 493, 570, 646
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 3 cut(s) 271, 503, 580
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 4 cut(s) 114, 171, 776, 891
BseNI ACTGG 2 cut(s) 384, 819
BseRI GAGGAG 3 cut(s) 105, 983, 1032
BseSI GKGCMC 1 cut(s) 814
BseXI GCAGC 3 cut(s) 449, 875, 883
BseYI CCCAGC 2 cut(s) 710, 795
BshFI GGCC 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 187
BslI CCNNNNNNNGG 3 cut(s) 271, 503, 580
BsmAI GTCTC 2 cut(s) 339, 527
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 3 cut(s) 42, 115, 814
Bsp143I GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 2 cut(s) 148, 725
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 4 cut(s) 115, 170, 775, 892
BspLI GGNNCC 2 cut(s) 263, 1003
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 2 cut(s) 384, 819
BssECI CCNNGG 3 cut(s) 35, 675, 676
BssMI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
BssNI GRCGYC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 36, 677
Bst4CI ACNGT 3 cut(s) 220, 565, 619
BstACI GRCGYC 1 cut(s) 516
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 123, 157, 762, 900
BstF5I GGATG 3 cut(s) 493, 570, 646
BstKTI GATC 7 cut(s) 49, 270, 426, 606, 871, 994, 1021
BstMAI GTCTC 2 cut(s) 339, 527
BstMBI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 37, 119, 128
BstNI CCWGG 2 cut(s) 36, 677
BstNSI RCATGY 2 cut(s) 131, 491
BstSCI CCNGG 2 cut(s) 34, 675
BstSLI GKGCMC 1 cut(s) 814
BstSNI TACGTA 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 449, 875, 883
BstV2I GAAGAC 2 cut(s) 287, 559
BstX2I RGATCY 2 cut(s) 46, 1018
BstYI RGATCY 2 cut(s) 46, 1018
BsuRI GGCC 1 cut(s) 383
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 3 cut(s) 493, 570, 646
BtsIMutI CAGTG 1 cut(s) 812
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 631
Csp6I GTAC 3 cut(s) 550, 584, 747
CviAII CATG 2 cut(s) 128, 488
CviQI GTAC 3 cut(s) 550, 584, 747
DdeI CTNAG 4 cut(s) 123, 157, 762, 900
DpnI GATC 7 cut(s) 48, 269, 425, 605, 870, 993, 1020
DpnII GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
Eco105I TACGTA 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 34, 675
EcoT22I ATGCAT 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 2 cut(s) 131, 491
FatI CATG 2 cut(s) 127, 487
FbaI TGATCA 1 cut(s) 991
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 438, 864, 897
FokI GGATG 3 cut(s) 480, 557, 653
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 438, 864, 897
FspBI CTAG 4 cut(s) 137, 350, 368, 611
GluI GCNGC 3 cut(s) 438, 864, 897
GsaI CCCAGC 2 cut(s) 714, 799
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 2 cut(s) 131, 491
HinfI GANTC 4 cut(s) 16, 23, 155, 173
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 172, 338, 498, 1018
Hpy188III TCNNGA 9 cut(s) 20, 214, 296, 427, 733, 872, 944, 983, 999
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 60, 584
HpyCH4III ACNGT 3 cut(s) 220, 565, 619
HpyCH4IV ACGT 3 cut(s) 225, 516, 849
HpyCH4V TGCA 4 cut(s) 131, 487, 493, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 119, 128
HpyF3I CTNAG 4 cut(s) 123, 157, 762, 900
HpySE526I ACGT 3 cut(s) 225, 516, 849
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 2 cut(s) 131, 491
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
LmnI GCTCC 2 cut(s) 118, 1001
Lsp1109I GCAGC 3 cut(s) 449, 875, 883
LweI GCATC 4 cut(s) 289, 502, 631, 967
MaeI CTAG 4 cut(s) 137, 350, 368, 611
MaeII ACGT 3 cut(s) 225, 516, 849
MaeIII GTNAC 1 cut(s) 319
MalI GATC 7 cut(s) 48, 269, 425, 605, 870, 993, 1020
MboI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
MboII GAAGA 5 cut(s) 292, 559, 598, 946, 959
MflI RGATCY 2 cut(s) 46, 1018
MhlI GDGCHC 3 cut(s) 42, 115, 814
MluCI AATT 4 cut(s) 291, 500, 626, 821
MlyI GAGTC 2 cut(s) 32, 149
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 9 cut(s) 66, 83, 126, 144, 263, 265, 540, 853, 961
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 4 cut(s) 198, 522, 819, 939
MslI CAYNNNNRTG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 36, 677
MvaI CCWGG 2 cut(s) 36, 677
MwoI GCNNNNNNNGC 3 cut(s) 37, 119, 128
NdeII GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
NlaIII CATG 2 cut(s) 131, 491
NlaIV GGNNCC 2 cut(s) 263, 1003
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 2 cut(s) 131, 491
PaeI GCATGC 1 cut(s) 131
PasI CCCWGGG 1 cut(s) 676
PfeI GAWTC 2 cut(s) 16, 173
PkrI GCNGC 3 cut(s) 439, 865, 898
PleI GAGTC 2 cut(s) 31, 149
PpsI GAGTC 2 cut(s) 31, 149
Ppu21I YACGTR 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 939
Psp6I CCWGG 2 cut(s) 34, 675
PspFI CCCAGC 2 cut(s) 710, 795
PspGI CCWGG 2 cut(s) 34, 675
PspN4I GGNNCC 2 cut(s) 263, 1003
PspPI GGNCC 1 cut(s) 631
PsuI RGATCY 2 cut(s) 46, 1018
RsaI GTAC 3 cut(s) 551, 585, 748
RsaNI GTAC 3 cut(s) 550, 584, 747
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 4 cut(s) 198, 522, 819, 939
SatI GCNGC 3 cut(s) 438, 864, 897
Sau3AI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
Sau96I GGNCC 1 cut(s) 631
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 2 cut(s) 32, 149
ScrFI CCNGG 2 cut(s) 36, 677
SduI GDGCHC 3 cut(s) 42, 115, 814
SfaNI GCATC 4 cut(s) 289, 502, 631, 967
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 404
SnaBI TACGTA 1 cut(s) 226
SphI GCATGC 1 cut(s) 131
Sse9I AATT 4 cut(s) 291, 500, 626, 821
SsiI CCGC 2 cut(s) 148, 725
SspI AATATT 1 cut(s) 468
SspMI CTAG 4 cut(s) 137, 350, 368, 611
StyD4I CCNGG 2 cut(s) 34, 675
TaaI ACNGT 3 cut(s) 220, 565, 619
TaiI ACGT 3 cut(s) 228, 519, 852
TaqI TCGA 2 cut(s) 19, 270
TasI AATT 4 cut(s) 291, 500, 626, 821
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 2 cut(s) 16, 173
Tru1I TTAA 4 cut(s) 198, 522, 819, 939
Tru9I TTAA 4 cut(s) 198, 522, 819, 939
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 437, 863, 896
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 1 cut(s) 819
VpaK11BI GGWCC 1 cut(s) 631
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 3 cut(s) 291, 500, 821
XceI RCATGY 2 cut(s) 131, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 4 cut(s) 137, 350, 368, 611
ZraI GACGTC 1 cut(s) 517
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.