Prupe.6G066200_v2.0.a1

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000537
Physical Location & Seq
Reverse (-)
4571555 .. 4572031
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G066200.1

Sequence Viewer

Length: 477 bp
ATGTCGATCATCCCCAGCTTCCGACGAGGCAGCATTTTCGACCCTTTCTCTCTCGATCTCTGGGACTCCTTAAAGGATTTTCCATTCCCTTCCTCCTCATCACTTTCCACATTCCCTGAAGTTTCCCTGGAAAAATCAACTTTCCTGAACACCAGAATCGACTGGAAGGAGACCCCAGAAGCCCACGTGTTCAAGGCAGACCTCCCGGGGCTGAAGAAAGAAGAGGTGAAGGTGGAGGTTGCAGACGACAGGGTTCTTCAGATCAGCGGAGAGAGGAACGTAGAGAAGGAGGACAAGAATGACAAGTGGCACAGAGTGGAGCGCAGCAGCGGCAAGTTCTTGAGGAGGTTTCAGCTTCCTGAGAATGCAAAGGTGGACGAGATTAAGGCTGCAATGGAGAATGGGGTTCTGAGTGTCACTGTTCCAAAGGCAAAGGTGAAGAAGCCTGATGTCAAAGCCATTGAAATATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

6.76

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 330
AcuI CTGAAG 3 cut(s) 138, 233, 242
AcvI CACGTG 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 2 cut(s) 193, 464
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 18, 355
AluI AGCT 2 cut(s) 18, 355
Alw26I GTCTC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 30, 324, 327, 389
AspLEI GCGC 1 cut(s) 324
AsuC2I CCSGG 2 cut(s) 206, 207
AsuHPI GGTGA 2 cut(s) 238, 448
AvaI CYCGRG 1 cut(s) 205
BbrPI CACGTG 1 cut(s) 187
BbvI GCAGC 4 cut(s) 42, 336, 339, 376
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 2 cut(s) 206, 207
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 5 cut(s) 31, 325, 328, 331, 390
BlsI GCNGC 5 cut(s) 32, 326, 329, 332, 391
Bme1390I CCNGG 3 cut(s) 128, 206, 207
BmeT110I CYCGRG 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 128, 206, 207
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 206, 207
BsaAI YACGTR 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 126, 205, 206
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 126, 205, 206
BseGI GGATG 1 cut(s) 9
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 351, 401
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 2 cut(s) 85, 358
BseXI GCAGC 4 cut(s) 42, 336, 339, 376
BseYI CCCAGC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 205
Bsp143I GATC 3 cut(s) 6, 55, 261
BspACI CCGC 2 cut(s) 267, 330
BspCNI CTCAG 2 cut(s) 352, 402
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 126, 205, 206
BssMI GATC 3 cut(s) 6, 55, 261
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 360, 410
BstF5I GGATG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 9, 58, 264
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 6, 55, 261
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 126, 204, 205
BstV1I GCAGC 4 cut(s) 42, 336, 339, 376
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 417
CfoI GCGC 1 cut(s) 324
Cfr9I CCCGGG 1 cut(s) 205
CviJI RGCY 7 cut(s) 18, 182, 211, 355, 389, 445, 458
CviKI_1 RGCY 7 cut(s) 18, 182, 211, 355, 389, 445, 458
DdeI CTNAG 2 cut(s) 360, 410
DpnI GATC 3 cut(s) 8, 57, 263
DpnII GATC 3 cut(s) 6, 55, 261
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 164
Eco57I CTGAAG 3 cut(s) 138, 233, 242
Eco72I CACGTG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 126
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 5 cut(s) 31, 325, 328, 331, 390
Fsp4HI GCNGC 5 cut(s) 31, 325, 328, 331, 390
GlaI GCGC 1 cut(s) 323
GluI GCNGC 5 cut(s) 31, 325, 328, 331, 390
GsaI CCCAGC 1 cut(s) 18
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 2 cut(s) 65, 156
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 238, 448
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 23, 261, 411
Hpy188III TCNNGA 4 cut(s) 53, 145, 340, 359
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 99, 160, 223, 280
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 2 cut(s) 186, 279
HpyCH4V TGCA 3 cut(s) 242, 368, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 2 cut(s) 360, 410
HpySE526I ACGT 2 cut(s) 186, 279
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 3 cut(s) 6, 55, 261
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 4 cut(s) 42, 336, 339, 376
MaeII ACGT 2 cut(s) 186, 279
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 8, 57, 263
MboI GATC 3 cut(s) 6, 55, 261
MboII GAAGA 4 cut(s) 226, 233, 248, 451
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 46
MseI TTAA 3 cut(s) 71, 384, 475
MspA1I CMGCKG 2 cut(s) 267, 330
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 3 cut(s) 128, 206, 207
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 2 cut(s) 206, 207
NdeII GATC 3 cut(s) 6, 55, 261
NmuCI GTSAC 1 cut(s) 415
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 5 cut(s) 32, 326, 329, 332, 391
PleI GAGTC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 126
PspCI CACGTG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 126
SaqAI TTAA 3 cut(s) 71, 384, 475
SatI GCNGC 5 cut(s) 31, 325, 328, 331, 390
Sau3AI GATC 3 cut(s) 6, 55, 261
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 3 cut(s) 128, 206, 207
SmaI CCCGGG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SsiI CCGC 2 cut(s) 267, 330
StyD4I CCNGG 3 cut(s) 126, 204, 205
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 2 cut(s) 189, 282
TaqI TCGA 4 cut(s) 5, 39, 54, 159
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 3 cut(s) 71, 384, 475
Tru9I TTAA 3 cut(s) 71, 384, 475
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 4 cut(s) 30, 324, 327, 389
Tsp45I GTSAC 1 cut(s) 415
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 1 cut(s) 424
XmaI CCCGGG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.