Rh5CG454200

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000537
Physical Location & Seq
Forward (+)
63251070 .. 63252320
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG454200.1

Sequence Viewer

Length: 465 bp
ATGTCGCTCATCCCAAATTTCCGACGAAACAGCGTCTTCGACCTCGATCTCTGGGACCCATTCAGGGATTTCCAATTCCCTTCTTCATCTCTCTCCACATTCCCTGAATTTCCTGGCGAGAATTCGGCTTTCCTCAACACCCGGATCGACTGGAAGGAGACCCCAGAAGCCCATGTGTTCAAGGCCGACCTTCCGGGGCTGAAGAAAGAAGAGGTCAAGGTTGAGATTGAAGATGACAGGGTGCTGCAGATCAGCGGAGAGAGGAAGATAGAGAAGGAGGACAAGAACGACAAGTGGCACCGGGTCGAGAGAAGCAGCGGCAAGTTCTCCAGGAGGTTCAGGCTTCCTGAGAATGCGAAGGTTGATGAGGTTAAGGCTGCTATGGAGAACGGGGTTCTCAGTGTGACTGTTCCGAAGGCAGAGGTGAAGAGGCCTGATGTCAAAGCCATTGAAATTTCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

154

Amino Acids

17.79

Weight (kDa)

5.83

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 50 - 153 3.7e-32 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AciI CCGC 2 cut(s) 255, 318
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 4 cut(s) 16, 107, 121, 453
AcuI CTGAAG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 181, 230, 452
AjnI CCWGG 2 cut(s) 112, 329
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 183, 431
ApeKI GCWGC 3 cut(s) 244, 315, 377
ApoI RAATTY 4 cut(s) 16, 107, 121, 453
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 3 cut(s) 142, 195, 302
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 3 cut(s) 231, 327, 364
BciT130I CCWGG 2 cut(s) 114, 331
BcnI CCSGG 3 cut(s) 142, 195, 302
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 245
BisI GCNGC 4 cut(s) 245, 316, 319, 378
BlsI GCNGC 4 cut(s) 246, 317, 320, 379
Bme1390I CCNGG 5 cut(s) 114, 142, 195, 302, 331
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 56, 57, 299
BmrFI CCNGG 5 cut(s) 114, 142, 195, 302, 331
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 313
BpuMI CCSGG 3 cut(s) 142, 195, 302
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 114, 331
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 339, 412
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 231, 327, 364
BshFI GGCC 2 cut(s) 185, 433
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 142, 194, 301
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 185, 433
Bso31I GGTCTC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 46, 144, 249
BspACI CCGC 2 cut(s) 255, 318
BspANI GGCC 2 cut(s) 185, 433
BspCNI CTCAG 2 cut(s) 340, 411
BspLI GGNNCC 3 cut(s) 56, 57, 299
BspMAI CTGCAG 1 cut(s) 249
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 46, 144, 249
Bst2UI CCWGG 2 cut(s) 114, 331
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 2 cut(s) 204, 422
BstDEI CTNAG 2 cut(s) 348, 398
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 3 cut(s) 49, 147, 252
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 46, 144, 249
BstNI CCWGG 2 cut(s) 114, 331
BstSCI CCNGG 5 cut(s) 112, 140, 193, 300, 329
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 3 cut(s) 231, 327, 364
BstV2I GAAGAC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 185, 433
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 22
CviAII CATG 1 cut(s) 173
CviJI RGCY 8 cut(s) 128, 170, 185, 199, 343, 377, 433, 446
CviKI_1 RGCY 8 cut(s) 128, 170, 185, 199, 343, 377, 433, 446
DdeI CTNAG 2 cut(s) 348, 398
DpnI GATC 3 cut(s) 48, 146, 251
DpnII GATC 3 cut(s) 46, 144, 249
Eam1104I CTCTTC 2 cut(s) 204, 422
EarI CTCTTC 2 cut(s) 204, 422
Eco147I AGGCCT 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 112, 329
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 174, 383
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 245, 316, 319, 378
Fsp4HI GCNGC 4 cut(s) 245, 316, 319, 378
GluI GCNGC 4 cut(s) 245, 316, 319, 378
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 2 cut(s) 185, 433
HapII CCGG 3 cut(s) 142, 194, 301
HgaI GACGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 176
HpaII CCGG 3 cut(s) 142, 194, 301
HphI GGTGA 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 23, 414
Hpy188III TCNNGA 2 cut(s) 307, 347
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 6 cut(s) 90, 148, 200, 268, 352, 409
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 348, 398
Hsp92II CATG 1 cut(s) 176
KflI GGGWCCC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 46, 144, 249
Lsp1109I GCAGC 3 cut(s) 231, 327, 364
MaeIII GTNAC 1 cut(s) 403
MalI GATC 3 cut(s) 48, 146, 251
MboI GATC 3 cut(s) 46, 144, 249
MboII GAAGA 7 cut(s) 28, 75, 214, 221, 242, 277, 439
MluCI AATT 5 cut(s) 16, 74, 107, 121, 453
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 9 cut(s) 53, 143, 205, 255, 271, 327, 361, 415, 423
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 2 cut(s) 255, 318
MspI CCGG 3 cut(s) 142, 194, 301
MspR9I CCNGG 5 cut(s) 114, 142, 195, 302, 331
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 2 cut(s) 114, 331
NciI CCSGG 3 cut(s) 142, 195, 302
NdeII GATC 3 cut(s) 46, 144, 249
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 3 cut(s) 56, 57, 299
NmuCI GTSAC 1 cut(s) 403
PceI AGGCCT 1 cut(s) 433
PctI GAATGC 1 cut(s) 358
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 4 cut(s) 246, 317, 320, 379
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 112, 329
PspGI CCWGG 2 cut(s) 112, 329
PspN4I GGNNCC 3 cut(s) 56, 57, 299
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 4 cut(s) 245, 316, 319, 378
Sau3AI GATC 3 cut(s) 46, 144, 249
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 5 cut(s) 114, 142, 195, 302, 331
SetI ASST 8 cut(s) 45, 192, 216, 222, 338, 363, 372, 426
SfcI CTRYAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 55
Sse9I AATT 5 cut(s) 16, 74, 107, 121, 453
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 2 cut(s) 255, 318
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 5 cut(s) 112, 140, 193, 300, 329
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 39, 45, 147, 306
TasI AATT 5 cut(s) 16, 74, 107, 121, 453
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 244, 315, 377
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 4 cut(s) 16, 107, 121, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.