Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004250.1

Orthogroup ID

OG0000537

Physical Location & Seq

Genomic Coordinates Forward (+)

147297 .. 147683

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004250.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ctggacccctggcccttccgctccgtctcgtcgcagtccgaaacggcgtcgctcgcccacgcgcacatcgactggaaggagacgccgacggcgcacgtgttcaaggccgacgtgccgggcctgcgcaaggacgaggtcaaggtggaggtggaggacggcaagatcctccagatcagcggagagcggaagcgcgatgtggaggagaagaccgacacgtggcaccgggtggaacgcagcagcggcaggttcacgaggcggttccggctgccggagaatgcgagagtcgagcaggtccaggcggcgatggagaacggcgtcctcaccgtcacggtgcctaagggggaggccaagaaggtcgatgtcaggtcaattgagatttctggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009636 GO:0010033 GO:0010035 GO:0010038 GO:0042221 GO:0042493 GO:0042542 GO:0045471 GO:0046677 GO:0046685 GO:0046686 GO:0046688 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

7.12

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07400 AT2G29500
fragaria_vesca	FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica	MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica	Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata	RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora	Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa	Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha	Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana	Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
Acc36I	ACCTGC	2 cut(s)	234, 280
AccB1I	GGYRCC	2 cut(s)	219, 331
AccBSI	CCGCTC	2 cut(s)	21, 184
AccII	CGCG	2 cut(s)	62, 192
AciI	CCGC	6 cut(s)	19, 177, 184, 240, 256, 299
AclWI	GGATC	1 cut(s)	157
AcvI	CACGTG	2 cut(s)	97, 216
AcyI	GRCGYC	3 cut(s)	47, 83, 315
AdeI	CACNNNGTG	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	127, 216, 268
AflIII	ACRYGT	2 cut(s)	96, 213
AgsI	TTSAA	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	8, 294
Alw26I	GTCTC	2 cut(s)	31, 74
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	4 cut(s)	11, 105, 118, 345
ApeKI	GCWGC	3 cut(s)	234, 237, 265
AspLEI	GCGC	4 cut(s)	64, 94, 126, 192
AspS9I	GGNCC	4 cut(s)	4, 12, 118, 292
AsuC2I	CCSGG	2 cut(s)	117, 224
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	4, 292
AxyI	CCTNAGG	1 cut(s)	336
BanI	GGYRCC	2 cut(s)	219, 331
BauI	CACGAG	1 cut(s)	250
BbrPI	CACGTG	2 cut(s)	97, 216
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	246, 249, 252
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	4 cut(s)	60, 105, 172, 328
BciT130I	CCWGG	2 cut(s)	10, 296
BcnI	CCSGG	2 cut(s)	117, 224
BcoDI	GTCTC	2 cut(s)	31, 74
BfuAI	ACCTGC	2 cut(s)	234, 280
BisI	GCNGC	5 cut(s)	235, 238, 241, 266, 300
BlsI	GCNGC	5 cut(s)	236, 239, 242, 267, 301
Bme1390I	CCNGG	4 cut(s)	10, 117, 224, 296
Bme18I	GGWCC	2 cut(s)	4, 292
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	4, 12, 118, 292
BmiI	GGNNCC	4 cut(s)	6, 221, 260, 333
BmrFI	CCNGG	4 cut(s)	10, 117, 224, 296
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	2 cut(s)	117, 224
BsaAI	YACGTR	2 cut(s)	97, 216
BsaHI	GRCGYC	3 cut(s)	47, 83, 315
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 216, 268
Bse1I	ACTGG	1 cut(s)	77
Bse21I	CCTNAGG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	10, 296
BseDI	CCNNGG	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	127, 216, 268
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	246, 249, 252
Bsh1236I	CGCG	2 cut(s)	62, 192
BshFI	GGCC	4 cut(s)	13, 107, 120, 347
BshNI	GGYRCC	2 cut(s)	219, 331
BsiSI	CCGG	4 cut(s)	116, 223, 262, 269
BslI	CCNNNNNNNGG	3 cut(s)	127, 216, 268
BsmAI	GTCTC	2 cut(s)	31, 74
BsmBI	CGTCTC	2 cut(s)	31, 74
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	4 cut(s)	13, 107, 120, 347
Bsp143I	GATC	2 cut(s)	162, 171
BspACI	CCGC	6 cut(s)	19, 177, 184, 240, 256, 299
BspANI	GGCC	4 cut(s)	13, 107, 120, 347
BspFNI	CGCG	2 cut(s)	62, 192
BspLI	GGNNCC	4 cut(s)	6, 221, 260, 333
BspMI	ACCTGC	2 cut(s)	234, 280
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	219, 331
BsrBI	CCGCTC	2 cut(s)	21, 184
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	162, 171
BssNI	GRCGYC	3 cut(s)	47, 83, 315
BssSI	CACGAG	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	10, 296
Bst4CI	ACNGT	2 cut(s)	325, 331
BstACI	GRCGYC	3 cut(s)	47, 83, 315
BstBAI	YACGTR	2 cut(s)	97, 216
BstC8I	GCNNGC	2 cut(s)	54, 122
BstDEI	CTNAG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstFNI	CGCG	2 cut(s)	62, 192
BstHHI	GCGC	4 cut(s)	64, 94, 126, 192
BstKTI	GATC	2 cut(s)	165, 174
BstMAI	GTCTC	2 cut(s)	31, 74
BstMBI	GATC	2 cut(s)	162, 171
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 91, 121, 240, 262
BstNI	CCWGG	2 cut(s)	10, 296
BstSCI	CCNGG	4 cut(s)	8, 115, 222, 294
BstUI	CGCG	2 cut(s)	62, 192
BstV1I	GCAGC	3 cut(s)	246, 249, 252
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	4 cut(s)	13, 107, 120, 347
BtgZI	GCGATG	2 cut(s)	207, 317
BtrI	CACGTC	1 cut(s)	112
BveI	ACCTGC	2 cut(s)	234, 280
Cac8I	GCNNGC	2 cut(s)	54, 122
CfoI	GCGC	4 cut(s)	64, 94, 126, 192
Cfr13I	GGNCC	4 cut(s)	4, 12, 118, 292
CseI	GACGC	3 cut(s)	36, 91, 304
CviJI	RGCY	5 cut(s)	13, 107, 120, 265, 347
CviKI_1	RGCY	5 cut(s)	13, 107, 120, 265, 347
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	164, 173
DpnII	GATC	2 cut(s)	162, 171
DraIII	CACNNNGTG	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	4, 292
Eco72I	CACGTG	2 cut(s)	97, 216
Eco81I	CCTNAGG	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	8, 294
Esp3I	CGTCTC	2 cut(s)	31, 74
Fnu4HI	GCNGC	5 cut(s)	235, 238, 241, 266, 300
Fsp4HI	GCNGC	5 cut(s)	235, 238, 241, 266, 300
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	4 cut(s)	63, 93, 125, 191
GluI	GCNGC	5 cut(s)	235, 238, 241, 266, 300
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	13, 107, 120, 347
HapII	CCGG	4 cut(s)	116, 223, 262, 269
HgaI	GACGC	3 cut(s)	36, 91, 304
HhaI	GCGC	4 cut(s)	64, 94, 126, 192
Hin1I	GRCGYC	3 cut(s)	47, 83, 315
Hin6I	GCGC	4 cut(s)	62, 92, 124, 190
HinP1I	GCGC	4 cut(s)	62, 92, 124, 190
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	4 cut(s)	116, 223, 262, 269
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	169, 250
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	4 cut(s)	34, 52, 91, 113
HpyAV	CCTTC	3 cut(s)	25, 70, 346
HpyCH4III	ACNGT	2 cut(s)	325, 331
HpyCH4IV	ACGT	3 cut(s)	96, 111, 215
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 91, 121, 240, 262
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	3 cut(s)	96, 111, 215
Hsp92I	GRCGYC	3 cut(s)	47, 83, 315
HspAI	GCGC	4 cut(s)	62, 92, 124, 190
Kzo9I	GATC	2 cut(s)	162, 171
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	3 cut(s)	246, 249, 252
MaeII	ACGT	3 cut(s)	96, 111, 215
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	164, 173
MbiI	CCGCTC	2 cut(s)	21, 184
MboI	GATC	2 cut(s)	162, 171
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	8 cut(s)	127, 139, 145, 176, 193, 246, 329, 337
MseI	TTAA	1 cut(s)	385
MspA1I	CMGCKG	2 cut(s)	177, 240
MspI	CCGG	4 cut(s)	116, 223, 262, 269
MspR9I	CCNGG	4 cut(s)	10, 117, 224, 296
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	2 cut(s)	10, 296
MvnI	CGCG	2 cut(s)	62, 192
MwoI	GCNNNNNNNGC	5 cut(s)	53, 91, 121, 240, 262
NciI	CCSGG	2 cut(s)	117, 224
NdeII	GATC	2 cut(s)	162, 171
NlaIV	GGNNCC	4 cut(s)	6, 221, 260, 333
NmuCI	GTSAC	1 cut(s)	325
NsbI	TGCGCA	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	236, 239, 242, 267, 301
PleI	GAGTC	1 cut(s)	290
PmaCI	CACGTG	2 cut(s)	97, 216
PmlI	CACGTG	2 cut(s)	97, 216
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	2 cut(s)	97, 216
Psp6I	CCWGG	2 cut(s)	8, 294
PspCI	CACGTG	2 cut(s)	97, 216
PspGI	CCWGG	2 cut(s)	8, 294
PspN4I	GGNNCC	4 cut(s)	6, 221, 260, 333
PspPI	GGNCC	4 cut(s)	4, 12, 118, 292
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	5 cut(s)	235, 238, 241, 266, 300
Sau3AI	GATC	2 cut(s)	162, 171
Sau96I	GGNCC	4 cut(s)	4, 12, 118, 292
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	4 cut(s)	10, 117, 224, 296
SinI	GGWCC	2 cut(s)	4, 292
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	6 cut(s)	19, 177, 184, 240, 256, 299
StyD4I	CCNGG	4 cut(s)	8, 115, 222, 294
TaaI	ACNGT	2 cut(s)	325, 331
TaiI	ACGT	3 cut(s)	99, 114, 218
TaqI	TCGA	3 cut(s)	69, 285, 357
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	369
TauI	GCSGC	2 cut(s)	243, 302
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	234, 237, 265
Tsp45I	GTSAC	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	4, 292
XagI	CCTNNNNNAGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.