Rmu_co8027810.1_g000001

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8027810.1
OG0000537
Physical Location & Seq
Reverse (-)
2 .. 374
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8027810.1_g000001.1.cds

Sequence Viewer

Length: 373 bp
atgtcgctcattcccaattttcgacaaactttcaacaaacattatcttcgacctcgatctcttggacccattcagagatttcgaattcccttcctcatcgctctccacattcgagaaaattcagctttcatcaacaccaggatcgactggaaggagaccccagaagcccatgtgttcaaggctgacatttcggggcagaagaaagaagaggtcaaggctaagattgaagatgacagggtgctgcagatcagcagagagacgaagacagagaaggaggacaagaacggcaagtggcaccggatcgataggatcatcggtaagttctcgaggaagttcaggcttcttgagaatgcgaaagttaatgagattaagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

124

Amino Acids

14.84

Weight (kDa)

10.2

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AclWI GGATC 3 cut(s) 149, 308, 317
AcsI RAATTY 2 cut(s) 84, 118
AgsI TTSAA 3 cut(s) 34, 178, 227
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 149, 251
AlwI GGATC 3 cut(s) 149, 308, 317
Ama87I CYCGRG 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 2 cut(s) 84, 118
AspS9I GGNCC 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 149, 251
BfmI CTRYAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 67, 296
BmrFI CCNGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 303
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 149, 251
BsmBI CGTCTC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 325
Bsp119I TTCGAA 1 cut(s) 82
Bsp143I GATC 5 cut(s) 56, 141, 246, 300, 309
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 67, 296
BspMAI CTGCAG 1 cut(s) 246
BspPI GGATC 3 cut(s) 149, 308, 317
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 152
BssMI GATC 5 cut(s) 56, 141, 246, 300, 309
Bst2UI CCWGG 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 219
BstKTI GATC 5 cut(s) 59, 144, 249, 303, 312
BstMAI GTCTC 2 cut(s) 149, 251
BstMBI GATC 5 cut(s) 56, 141, 246, 300, 309
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 125, 167, 182, 218, 340
CviKI_1 RGCY 5 cut(s) 125, 167, 182, 218, 340
DdeI CTNAG 1 cut(s) 219
DpnI GATC 5 cut(s) 58, 143, 248, 302, 311
DpnII GATC 5 cut(s) 56, 141, 246, 300, 309
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 173
FaiI YATR 1 cut(s) 171
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
HapII CCGG 1 cut(s) 298
Hin1II CATG 1 cut(s) 173
HpaII CCGG 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 113, 325, 344
HpyAV CCTTC 3 cut(s) 100, 145, 265
HpyCH4V TGCA 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 5 cut(s) 56, 141, 246, 300, 309
LpnPI CCDG 7 cut(s) 124, 133, 151, 174, 220, 311, 322
Lsp1109I GCAGC 1 cut(s) 228
MalI GATC 5 cut(s) 58, 143, 248, 302, 311
MboI GATC 5 cut(s) 56, 141, 246, 300, 309
MboII GAAGA 5 cut(s) 38, 211, 218, 239, 274
MluCI AATT 3 cut(s) 16, 84, 118
MnlI CCTC 5 cut(s) 63, 104, 202, 268, 321
MseI TTAA 2 cut(s) 360, 369
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 139
NdeII GATC 5 cut(s) 56, 141, 246, 300, 309
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 2 cut(s) 67, 296
NspV TTCGAA 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 325
PctI GAATGC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 67, 296
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 360, 369
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 5 cut(s) 56, 141, 246, 300, 309
Sau96I GGNCC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 139
SetI ASST 3 cut(s) 55, 127, 213
SfcI CTRYAG 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 325
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 325, 344
SmoI CTYRAG 2 cut(s) 325, 344
Sse9I AATT 3 cut(s) 16, 84, 118
StyD4I CCNGG 1 cut(s) 137
TaqI TCGA 8 cut(s) 22, 49, 55, 82, 112, 144, 303, 326
TasI AATT 3 cut(s) 16, 84, 118
Tru1I TTAA 2 cut(s) 360, 369
Tru9I TTAA 2 cut(s) 360, 369
TseI GCWGC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 2 cut(s) 84, 118
XhoI CTCGAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.