Rroxscaffold_1G00013950

kDa class I heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000537
Physical Location & Seq
Forward (+)
17243855 .. 17244331
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013950.1

Sequence Viewer

Length: 477 bp
ATGTCGCTTATCCCCAATTTCCGACGAAACAGCAACATCTTTGACCCCTTTTCCATCGATCTCTGGGACCCCTTCAAGGATTTTCCATTCCCGTCTTCATCGCTCTCTCTTTTTCCCGAATTTCCCCGCGAAAATTCGGCTTTTGTCAACACTAGGATCGACTGGAAGGAGACCCCGGAAGCCCATGTGTTCAAGGCTGACATTCCGGGGCTGACGAAAGAAGAGGTCAAGGTTGAGGTCGAAGATGACAGGGTGCTTCAGATCAGCGGAGAGAGGAAGATAGAGAAGGAGGACAAGAACGACACCTGGCACCGGGTCGAGAGAAGCAGCGGCAAGTTCTCCAGAAGGTTCAGGCTTCCTGAGAATGCCAAGATGGATGAAATCAAGGCTGCTATGGAGAACGGGGTTCTCAGCGTGACTGTTCCAAAGGCGGAGGTGAAAAGGCCTGATGTTAAAGCCATTCAAATCTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

158

Amino Acids

18.27

Weight (kDa)

5.81

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 54 - 157 4e-32 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 127, 267, 330, 431
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 2 cut(s) 119, 133
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 76, 312
AgsI TTSAA 3 cut(s) 76, 193, 464
AjnI CCWGG 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 327, 389
ApoI RAATTY 2 cut(s) 119, 133
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 3 cut(s) 176, 207, 314
AsuHPI GGTGA 1 cut(s) 448
AvaII GGWCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 339, 376
BccI CCATC 2 cut(s) 62, 367
BciT130I CCWGG 1 cut(s) 307
BcnI CCSGG 3 cut(s) 176, 207, 314
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 153
BisI GCNGC 3 cut(s) 328, 331, 390
BlsI GCNGC 3 cut(s) 329, 332, 391
Bme1390I CCNGG 4 cut(s) 176, 207, 307, 314
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 68, 69, 311
BmrFI CCNGG 4 cut(s) 176, 207, 307, 314
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 325
BpuMI CCSGG 3 cut(s) 176, 207, 314
Bsa29I ATCGAT 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 174, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 312
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 174, 206
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 76, 312
BseMII CTCAG 2 cut(s) 351, 424
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 339, 376
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 445
BshNI GGYRCC 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 3 cut(s) 176, 206, 313
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 76, 312
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 58, 156, 261
BspACI CCGC 4 cut(s) 127, 267, 330, 431
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 2 cut(s) 352, 423
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 68, 69, 311
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 174, 206
BssMI GATC 3 cut(s) 58, 156, 261
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 360, 410
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 3 cut(s) 61, 159, 264
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 58, 156, 261
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 4 cut(s) 174, 205, 305, 312
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 339, 376
BstV2I GAAGAC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 445
BsuTUI ATCGAT 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 140, 182, 197, 211, 355, 389, 445, 458
CviKI_1 RGCY 8 cut(s) 140, 182, 197, 211, 355, 389, 445, 458
DdeI CTNAG 2 cut(s) 360, 410
DpnI GATC 3 cut(s) 60, 158, 263
DpnII GATC 3 cut(s) 58, 156, 261
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 305
FaeI CATG 1 cut(s) 188
FaiI YATR 2 cut(s) 186, 395
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 184
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 3 cut(s) 328, 331, 390
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 328, 331, 390
FspBI CTAG 1 cut(s) 153
GluI GCNGC 3 cut(s) 328, 331, 390
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 445
HapII CCGG 3 cut(s) 176, 206, 313
Hin1II CATG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 3 cut(s) 176, 206, 313
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 23, 261
Hpy188III TCNNGA 4 cut(s) 116, 319, 342, 359
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 82, 160, 280, 339
HpyCH4III ACNGT 1 cut(s) 421
HpyF3I CTNAG 2 cut(s) 360, 410
Hsp92II CATG 1 cut(s) 188
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 58, 156, 261
Lsp1109I GCAGC 2 cut(s) 339, 376
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 60, 158, 263
MboI GATC 3 cut(s) 58, 156, 261
MboII GAAGA 4 cut(s) 87, 233, 254, 289
MluCI AATT 3 cut(s) 16, 119, 133
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 217, 229, 267, 283, 427
MseI TTAA 2 cut(s) 453, 475
MspA1I CMGCKG 2 cut(s) 267, 330
MspI CCGG 3 cut(s) 176, 206, 313
MspR9I CCNGG 4 cut(s) 176, 207, 307, 314
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 129
NciI CCSGG 3 cut(s) 176, 207, 314
NdeII GATC 3 cut(s) 58, 156, 261
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 3 cut(s) 68, 69, 311
NmuCI GTSAC 1 cut(s) 415
PceI AGGCCT 1 cut(s) 445
PctI GAATGC 1 cut(s) 370
PkrI GCNGC 3 cut(s) 329, 332, 391
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 68, 69, 311
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
SaqAI TTAA 2 cut(s) 453, 475
SatI GCNGC 3 cut(s) 328, 331, 390
Sau3AI GATC 3 cut(s) 58, 156, 261
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 4 cut(s) 176, 207, 307, 314
SetI ASST 6 cut(s) 228, 234, 240, 308, 350, 438
SinI GGWCC 1 cut(s) 67
Sse9I AATT 3 cut(s) 16, 119, 133
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 4 cut(s) 127, 267, 330, 431
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 4 cut(s) 174, 205, 305, 312
TaaI ACNGT 1 cut(s) 421
TaqI TCGA 4 cut(s) 57, 159, 240, 318
TasI AATT 3 cut(s) 16, 119, 133
TauI GCSGC 1 cut(s) 333
Tru1I TTAA 2 cut(s) 453, 475
Tru9I TTAA 2 cut(s) 453, 475
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 327, 389
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 87, 393
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 2 cut(s) 119, 133
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.