FvH4_3g37360

kDa class I heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000537
Physical Location & Seq
Forward (+)
32074284 .. 32075210
927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37360.t1

Sequence Viewer

Length: 465 bp
ATGTCGCTCATCCCCAACTTCCGACGAAACAGCGACTTTGATCCCTTTTCCCTCGATCTCTGTGATCCTTTCAAGGATTTCCAATTCCCTACTCCTTCTTTCTCTGAATTTCCTCATGAAAACTCGGCCTTTGTCAACACTAGGATCGACTGGAAGGAGACTCCGGAAGCACATGTGTTTAAGGCTGACATTCCAGGGCTGAAGAAAGAAGAGGTCAAGGTTGAGGTCGAAGATGACAGGGTGCTTCAGATTAGCGGAGAGAGGAAGATAGAGAAGGAGGACAAGAATGATACATGGCACCGGGTTGAGCGTAGCAGCGGCAAGTTCTCGAGGAGGTTCAGGCTTCCAGAGAATGCCAAGATAGATGAGATTAAGGCTGCTATGGAGAATGGGGTTCTCAGTGTGACCATTCCTAAGGTGGAGGTGAAGAAGCCTGATGTCAAAGCCATTGAAATCTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

155

Amino Acids

17.81

Weight (kDa)

5.51

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 50 - 153 9.7e-32 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 2 cut(s) 255, 318
AclWI GGATC 3 cut(s) 35, 59, 152
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 2 cut(s) 221, 230
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 2 cut(s) 73, 452
AjnI CCWGG 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 35, 59, 152
Ama87I CYCGRG 1 cut(s) 328
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 315, 377
ApoI RAATTY 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 414
BanI GGYRCC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 327, 364
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 141
BisI GCNGC 3 cut(s) 316, 319, 378
BlsI GCNGC 3 cut(s) 317, 320, 379
Bme1390I CCNGG 2 cut(s) 195, 302
BmeT110I CYCGRG 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 195, 302
BpuMI CCSGG 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 2 cut(s) 327, 364
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 2 cut(s) 164, 301
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 40, 55, 64, 144
BspACI CCGC 2 cut(s) 255, 318
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 163
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 299
BspPI GGATC 3 cut(s) 35, 59, 152
BspT107I GGYRCC 1 cut(s) 297
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 4 cut(s) 40, 55, 64, 144
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 398, 414
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 4 cut(s) 43, 58, 67, 147
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 40, 55, 64, 144
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 193, 300
BstV1I GCAGC 2 cut(s) 327, 364
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 406
CciI TCATGA 1 cut(s) 115
CviAII CATG 3 cut(s) 116, 173, 294
CviJI RGCY 7 cut(s) 128, 185, 199, 343, 377, 433, 446
CviKI_1 RGCY 7 cut(s) 128, 185, 199, 343, 377, 433, 446
DdeI CTNAG 2 cut(s) 398, 414
DpnI GATC 4 cut(s) 42, 57, 66, 146
DpnII GATC 4 cut(s) 40, 55, 64, 144
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 221, 230
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 119, 176, 297
FaiI YATR 4 cut(s) 117, 174, 295, 383
FatI CATG 3 cut(s) 115, 172, 293
Fnu4HI GCNGC 3 cut(s) 316, 319, 378
Fsp4HI GCNGC 3 cut(s) 316, 319, 378
FspBI CTAG 1 cut(s) 141
GluI GCNGC 3 cut(s) 316, 319, 378
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 164, 301
Hin1II CATG 3 cut(s) 119, 176, 297
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 160
HpaII CCGG 2 cut(s) 164, 301
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 23, 106, 249
Hpy188III TCNNGA 4 cut(s) 116, 164, 328, 347
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 105, 148, 268
HpyF3I CTNAG 2 cut(s) 398, 414
Hsp92II CATG 3 cut(s) 119, 176, 297
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 4 cut(s) 40, 55, 64, 144
Lsp1109I GCAGC 2 cut(s) 327, 364
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 403
MalI GATC 4 cut(s) 42, 57, 66, 146
MboI GATC 4 cut(s) 40, 55, 64, 144
MboII GAAGA 5 cut(s) 214, 221, 242, 277, 439
MluCI AATT 2 cut(s) 83, 107
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 9 cut(s) 62, 123, 205, 217, 255, 271, 324, 327, 415
MroI TCCGGA 1 cut(s) 163
MseI TTAA 3 cut(s) 180, 372, 463
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 2 cut(s) 164, 301
MspR9I CCNGG 2 cut(s) 195, 302
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 302
NdeII GATC 4 cut(s) 40, 55, 64, 144
NlaIII CATG 3 cut(s) 119, 176, 297
NlaIV GGNNCC 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 328
PagI TCATGA 1 cut(s) 115
PciI ACATGT 1 cut(s) 172
PctI GAATGC 1 cut(s) 358
PkrI GCNGC 3 cut(s) 317, 320, 379
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PscI ACATGT 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 299
SaqAI TTAA 3 cut(s) 180, 372, 463
SatI GCNGC 3 cut(s) 316, 319, 378
Sau3AI GATC 4 cut(s) 40, 55, 64, 144
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 195, 302
SetI ASST 6 cut(s) 216, 222, 228, 338, 420, 426
Sfr274I CTCGAG 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 2 cut(s) 83, 107
SsiI CCGC 2 cut(s) 255, 318
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 193, 300
TaqI TCGA 4 cut(s) 54, 147, 228, 329
TasI AATT 2 cut(s) 83, 107
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 3 cut(s) 180, 372, 463
Tru9I TTAA 3 cut(s) 180, 372, 463
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 315, 377
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 406
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 328
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.