Prupe.6G066500_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000537
Physical Location & Seq
Forward (+)
4586158 .. 4587008
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G066500.1

Sequence Viewer

Length: 477 bp
ATGTCGATCATCCCAAGCTTTAGACGAAGCAGCATTTTCGACCCCTTCTCCCTCAATCTCTGGGACCCCTTCAAGGATTTCCCATTCCCTTCCTCCTCATCACTTTCCACATTACCTGAATTTTCCCGGGAAAATTCAGCTTTCCTGAACACCAGAATTGATTGGAAGGAGACCCCGGAAGCCCACGTGTTCAAGGCGGACCTTCCAGGGCTGAAGAAAGAAGAGGTGAAGGTGGAGGTTGAAGACGACAGGGTGCTTCAGATCAGTGGAGAGAGGGATGTGGAGAAGGAGGAGAAGAACGACAAGTGGCACAGGGTGGAGCGCAGCAGCGGCAAGTTCCTGAGGAGGTTTCAGCTTCCGGAGAATGCGAAGGTAGACGAGATTAAGGCTGCAATGGAGAATGGGATTCTGAGTGTCACTGTTCCCAAAGCAGAAGTGAAAAAGGCCGATGTCAAAGCCATTGAAATCTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

159

Amino Acids

18.11

Weight (kDa)

5.57

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 2 cut(s) 197, 330
AcsI RAATTY 2 cut(s) 119, 133
AcuI CTGAAG 2 cut(s) 233, 242
AcvI CACGTG 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 4 cut(s) 73, 193, 242, 464
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 18, 140, 355
AluI AGCT 3 cut(s) 18, 140, 355
Alw26I GTCTC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 4 cut(s) 30, 324, 327, 389
ApoI RAATTY 2 cut(s) 119, 133
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 64, 199
AsuC2I CCSGG 3 cut(s) 127, 128, 176
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 64, 199
AxyI CCTNAGG 1 cut(s) 341
BbrPI CACGTG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 42, 336, 339, 376
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 3 cut(s) 127, 128, 176
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 5 cut(s) 31, 325, 328, 331, 390
BlsI GCNGC 5 cut(s) 32, 326, 329, 332, 391
Bme1390I CCNGG 4 cut(s) 127, 128, 176, 207
Bme18I GGWCC 2 cut(s) 64, 199
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 64, 199
BmiI GGNNCC 2 cut(s) 65, 66
BmrFI CCNGG 4 cut(s) 127, 128, 176, 207
BpiI GAAGAC 1 cut(s) 249
BpuMI CCSGG 3 cut(s) 127, 128, 176
BsaAI YACGTR 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 126, 174, 206
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 399
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 126, 174, 206
BseGI GGATG 2 cut(s) 9, 283
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 332, 401
BseRI GAGGAG 3 cut(s) 85, 305, 358
BseXI GCAGC 4 cut(s) 42, 336, 339, 376
BshFI GGCC 1 cut(s) 446
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 127, 176, 359
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 446
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 126
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 2 cut(s) 6, 261
BspACI CCGC 2 cut(s) 197, 330
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 2 cut(s) 333, 402
BspEI TCCGGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 65, 66
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 126, 174, 206
BssMI GATC 2 cut(s) 6, 261
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 341, 410
BstF5I GGATG 2 cut(s) 9, 283
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 2 cut(s) 9, 264
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 6, 261
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 4 cut(s) 125, 126, 174, 205
BstV1I GCAGC 4 cut(s) 42, 336, 339, 376
BstV2I GAAGAC 1 cut(s) 249
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 1 cut(s) 446
BtsCI GGATG 2 cut(s) 9, 283
BtsIMutI CAGTG 2 cut(s) 271, 417
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 64, 199
Cfr9I CCCGGG 1 cut(s) 126
CviJI RGCY 8 cut(s) 18, 140, 182, 211, 355, 389, 446, 458
CviKI_1 RGCY 8 cut(s) 18, 140, 182, 211, 355, 389, 446, 458
DdeI CTNAG 2 cut(s) 341, 410
DpnI GATC 2 cut(s) 8, 263
DpnII GATC 2 cut(s) 6, 261
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 64, 199
Eco57I CTGAAG 2 cut(s) 233, 242
Eco72I CACGTG 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 205
FaqI GGGAC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 5 cut(s) 31, 325, 328, 331, 390
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 5 cut(s) 31, 325, 328, 331, 390
GlaI GCGC 1 cut(s) 323
GluI GCNGC 5 cut(s) 31, 325, 328, 331, 390
HaeIII GGCC 1 cut(s) 446
HapII CCGG 3 cut(s) 127, 176, 359
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 1 cut(s) 406
HpaII CCGG 3 cut(s) 127, 176, 359
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 261, 411
Hpy188III TCNNGA 3 cut(s) 145, 340, 359
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 8 cut(s) 55, 79, 99, 160, 212, 223, 280, 364
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 2 cut(s) 341, 410
HpySE526I ACGT 1 cut(s) 186
HspAI GCGC 1 cut(s) 322
KflI GGGWCCC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 6, 261
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 4 cut(s) 42, 336, 339, 376
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 8, 263
MboI GATC 2 cut(s) 6, 261
MboII GAAGA 4 cut(s) 226, 233, 254, 307
MluCI AATT 3 cut(s) 119, 133, 156
MnlI CCTC 9 cut(s) 62, 103, 106, 217, 229, 267, 283, 336, 339
MroI TCCGGA 1 cut(s) 358
MseI TTAA 2 cut(s) 384, 475
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 3 cut(s) 127, 176, 359
MspR9I CCNGG 4 cut(s) 127, 128, 176, 207
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 3 cut(s) 127, 128, 176
NdeII GATC 2 cut(s) 6, 261
NlaIV GGNNCC 2 cut(s) 65, 66
NmuCI GTSAC 1 cut(s) 415
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 5 cut(s) 32, 326, 329, 332, 391
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 205
PspCI CACGTG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 65, 66
PspPI GGNCC 2 cut(s) 64, 199
PspPPI RGGWCCY 1 cut(s) 64
SaqAI TTAA 2 cut(s) 384, 475
SatI GCNGC 5 cut(s) 31, 325, 328, 331, 390
Sau3AI GATC 2 cut(s) 6, 261
Sau96I GGNCC 2 cut(s) 64, 199
ScrFI CCNGG 4 cut(s) 127, 128, 176, 207
SinI GGWCC 2 cut(s) 64, 199
SmaI CCCGGG 1 cut(s) 128
Sse9I AATT 3 cut(s) 119, 133, 156
SsiI CCGC 2 cut(s) 197, 330
StyD4I CCNGG 4 cut(s) 125, 126, 174, 205
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 5, 39
TasI AATT 3 cut(s) 119, 133, 156
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 384, 475
Tru9I TTAA 2 cut(s) 384, 475
TscAI CASTG 2 cut(s) 271, 424
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 4 cut(s) 30, 324, 327, 389
Tsp45I GTSAC 1 cut(s) 415
TspMI CCCGGG 1 cut(s) 126
TspRI CASTG 2 cut(s) 271, 424
VpaK11BI GGWCC 2 cut(s) 64, 199
XapI RAATTY 2 cut(s) 119, 133
XmaI CCCGGG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.