Rw1G031260

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000537
Physical Location & Seq
Reverse (-)
59391052 .. 59391497
446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031260.1

Sequence Viewer

Length: 321 bp
ATGTCGCTGATTCCCAACCCATTCGGCCGCCGATCGGGCGCGTTCGACCCGTTCTCGCTTGACGCGTGGGACCACCACCCACTGGACCCCTGGCCCTTCCGCTCCGTCTCGTCGCAGTCCGAAACGGCGTCGTTCGCCCACGCGCACATCGACTGGAAGGAGACGCCGACCAGCGGCAGGTTCACGAGGCGGTTCCGGCTGCCGGAGAATGCGAGAGTCGAGCAGGTCCAGGCGGCGATGGAGAACGGCGTCCTCACCGTCACGGTGCCTAAGGAGGAGGCCAAGAAGGTCGATGTCAGGTCAATTGAGATTTCTGGTTAA

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

6.41

Isoelectric Point (pI)

65.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 48 - 105 1.3e-14 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 168, 214
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 3 cut(s) 41, 65, 143
AciI CCGC 5 cut(s) 28, 100, 174, 190, 233
AcoI YGGCCR 1 cut(s) 25
AcyI GRCGYC 3 cut(s) 128, 164, 249
AfiI CCNNNNNNNGG 5 cut(s) 34, 82, 173, 177, 202
AflIII ACRYGT 1 cut(s) 63
AjnI CCWGG 2 cut(s) 89, 228
Alw26I GTCTC 2 cut(s) 112, 155
AoxI GGCC 3 cut(s) 25, 92, 279
ApeKI GCWGC 1 cut(s) 199
AspLEI GCGC 2 cut(s) 41, 145
AspS9I GGNCC 4 cut(s) 70, 85, 93, 226
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 3 cut(s) 70, 85, 226
AxyI CCTNAGG 1 cut(s) 270
BanI GGYRCC 1 cut(s) 265
BauI CACGAG 1 cut(s) 184
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 141, 262
BciT130I CCWGG 2 cut(s) 91, 230
BcoDI GTCTC 2 cut(s) 112, 155
BfuAI ACCTGC 2 cut(s) 168, 214
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 4 cut(s) 28, 175, 200, 234
BlsI GCNGC 4 cut(s) 29, 176, 201, 235
Bme1390I CCNGG 2 cut(s) 91, 230
Bme18I GGWCC 3 cut(s) 70, 85, 226
BmgT120I GGNCC 4 cut(s) 70, 85, 93, 226
BmiI GGNNCC 4 cut(s) 71, 87, 194, 267
BmrFI CCNGG 2 cut(s) 91, 230
BsaHI GRCGYC 3 cut(s) 128, 164, 249
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 82, 173, 177, 202
Bse1I ACTGG 2 cut(s) 87, 158
Bse21I CCTNAGG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 91, 230
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 5 cut(s) 34, 82, 173, 177, 202
BseNI ACTGG 2 cut(s) 87, 158
BseRI GAGGAG 1 cut(s) 290
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 186
Bsh1236I CGCG 3 cut(s) 41, 65, 143
Bsh1285I CGRYCG 2 cut(s) 28, 35
BshFI GGCC 3 cut(s) 27, 94, 281
BshNI GGYRCC 1 cut(s) 265
BsiEI CGRYCG 2 cut(s) 28, 35
BsiSI CCGG 2 cut(s) 196, 203
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 5 cut(s) 34, 82, 173, 177, 202
BsmAI GTCTC 2 cut(s) 112, 155
BsmBI CGTCTC 2 cut(s) 112, 155
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 3 cut(s) 27, 94, 281
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 5 cut(s) 28, 100, 174, 190, 233
BspANI GGCC 3 cut(s) 27, 94, 281
BspFNI CGCG 3 cut(s) 41, 65, 143
BspLI GGNNCC 4 cut(s) 71, 87, 194, 267
BspMI ACCTGC 2 cut(s) 168, 214
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 87, 158
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 3 cut(s) 128, 164, 249
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 91, 230
Bst4CI ACNGT 2 cut(s) 259, 265
BstACI GRCGYC 3 cut(s) 128, 164, 249
BstDEI CTNAG 1 cut(s) 270
BstFNI CGCG 3 cut(s) 41, 65, 143
BstHHI GCGC 2 cut(s) 41, 145
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 112, 155
BstMBI GATC 1 cut(s) 32
BstMCI CGRYCG 2 cut(s) 28, 35
BstMWI GCNNNNNNNGC 3 cut(s) 36, 134, 196
BstNI CCWGG 2 cut(s) 91, 230
BstSCI CCNGG 2 cut(s) 89, 228
BstUI CGCG 3 cut(s) 41, 65, 143
BstV1I GCAGC 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 3 cut(s) 27, 94, 281
BtgZI GCGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 80
BveI ACCTGC 2 cut(s) 168, 214
CfoI GCGC 2 cut(s) 41, 145
Cfr13I GGNCC 4 cut(s) 70, 85, 93, 226
CseI GACGC 4 cut(s) 71, 117, 172, 238
CviJI RGCY 4 cut(s) 27, 94, 199, 281
CviKI_1 RGCY 4 cut(s) 27, 94, 199, 281
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 25
Eco47I GGWCC 3 cut(s) 70, 85, 226
Eco52I CGGCCG 1 cut(s) 25
Eco81I CCTNAGG 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 89, 228
Esp3I CGTCTC 2 cut(s) 112, 155
FaqI GGGAC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 28, 175, 200, 234
Fsp4HI GCNGC 4 cut(s) 28, 175, 200, 234
GlaI GCGC 2 cut(s) 40, 144
GluI GCNGC 4 cut(s) 28, 175, 200, 234
HaeIII GGCC 3 cut(s) 27, 94, 281
HapII CCGG 2 cut(s) 196, 203
HgaI GACGC 4 cut(s) 71, 117, 172, 238
HhaI GCGC 2 cut(s) 41, 145
Hin1I GRCGYC 3 cut(s) 128, 164, 249
Hin6I GCGC 2 cut(s) 39, 143
HinP1I GCGC 2 cut(s) 39, 143
HinfI GANTC 2 cut(s) 10, 216
HpaII CCGG 2 cut(s) 196, 203
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 2 cut(s) 115, 133
HpyAV CCTTC 3 cut(s) 106, 151, 280
HpyCH4III ACNGT 2 cut(s) 259, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 134, 196
HpyF3I CTNAG 1 cut(s) 270
Hsp92I GRCGYC 3 cut(s) 128, 164, 249
HspAI GCGC 2 cut(s) 39, 143
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 34
MbiI CCGCTC 1 cut(s) 102
MboI GATC 1 cut(s) 32
MfeI CAATTG 1 cut(s) 303
MluCI AATT 1 cut(s) 303
MluI ACGCGT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 4 cut(s) 180, 263, 268, 271
MseI TTAA 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 2 cut(s) 196, 203
MspR9I CCNGG 2 cut(s) 91, 230
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 91, 230
MvnI CGCG 3 cut(s) 41, 65, 143
MwoI GCNNNNNNNGC 3 cut(s) 36, 134, 196
NdeII GATC 1 cut(s) 32
NlaIV GGNNCC 4 cut(s) 71, 87, 194, 267
NmuCI GTSAC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 147
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 4 cut(s) 29, 176, 201, 235
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 89, 228
PspGI CCWGG 2 cut(s) 89, 228
PspN4I GGNNCC 4 cut(s) 71, 87, 194, 267
PspPI GGNCC 4 cut(s) 70, 85, 93, 226
PvuI CGATCG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 4 cut(s) 28, 175, 200, 234
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 4 cut(s) 70, 85, 93, 226
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 91, 230
SetI ASST 4 cut(s) 182, 228, 291, 302
SinI GGWCC 3 cut(s) 70, 85, 226
Sse9I AATT 1 cut(s) 303
SsiI CCGC 5 cut(s) 28, 100, 174, 190, 233
StyD4I CCNGG 2 cut(s) 89, 228
TaaI ACNGT 2 cut(s) 259, 265
TaqI TCGA 4 cut(s) 45, 150, 219, 291
TasI AATT 1 cut(s) 303
TauI GCSGC 3 cut(s) 30, 177, 236
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 87
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 3 cut(s) 70, 85, 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.