Rh1AG353800

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000537
Physical Location & Seq
Reverse (-)
58990839 .. 58991024
186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG353800.1

Sequence Viewer

Length: 186 bp
ATGTCGCTGATTCCCAACCCATTCGGCCGCCGATCGGGCGCGTTCGACCCGTTCTCGCTTGACGCGTGGGACCACCACCCACTGGACCCCTGGCCCTTCCGCTCCGTCTCGTCGCAGTCCGAAACGGCGTCGTTCGCCCACGCGCACATCGACTGGAAGGAGACGCCGACGTGCCGGGCCTGCTGA

Protein Analysis

61

Amino Acids

6.91

Weight (kDa)

5.99

Isoelectric Point (pI)

77.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 3 cut(s) 41, 65, 143
AciI CCGC 2 cut(s) 28, 100
AcoI YGGCCR 1 cut(s) 25
AcyI GRCGYC 2 cut(s) 128, 164
AfiI CCNNNNNNNGG 2 cut(s) 34, 82
AflIII ACRYGT 1 cut(s) 63
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 112, 155
AoxI GGCC 3 cut(s) 25, 92, 177
AspLEI GCGC 2 cut(s) 41, 145
AspS9I GGNCC 4 cut(s) 70, 85, 93, 177
AsuC2I CCSGG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 70, 85
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 112, 155
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 91, 176
Bme18I GGWCC 2 cut(s) 70, 85
BmgBI CACGTC 1 cut(s) 171
BmgT120I GGNCC 4 cut(s) 70, 85, 93, 177
BmiI GGNNCC 2 cut(s) 71, 87
BmrFI CCNGG 2 cut(s) 91, 176
BpuMI CCSGG 1 cut(s) 176
BsaHI GRCGYC 2 cut(s) 128, 164
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 82
Bse1I ACTGG 2 cut(s) 87, 158
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 34, 82
BseNI ACTGG 2 cut(s) 87, 158
BseX3I CGGCCG 1 cut(s) 25
Bsh1236I CGCG 3 cut(s) 41, 65, 143
Bsh1285I CGRYCG 2 cut(s) 28, 35
BshFI GGCC 3 cut(s) 27, 94, 179
BsiEI CGRYCG 2 cut(s) 28, 35
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 34, 82
BsmAI GTCTC 2 cut(s) 112, 155
BsmBI CGTCTC 2 cut(s) 112, 155
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 3 cut(s) 27, 94, 179
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 2 cut(s) 28, 100
BspANI GGCC 3 cut(s) 27, 94, 179
BspFNI CGCG 3 cut(s) 41, 65, 143
BspLI GGNNCC 2 cut(s) 71, 87
BsrBI CCGCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 87, 158
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 2 cut(s) 128, 164
Bst2UI CCWGG 1 cut(s) 91
BstACI GRCGYC 2 cut(s) 128, 164
BstC8I GCNNGC 1 cut(s) 181
BstFNI CGCG 3 cut(s) 41, 65, 143
BstHHI GCGC 2 cut(s) 41, 145
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 112, 155
BstMBI GATC 1 cut(s) 32
BstMCI CGRYCG 2 cut(s) 28, 35
BstMWI GCNNNNNNNGC 3 cut(s) 36, 134, 180
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 89, 174
BstUI CGCG 3 cut(s) 41, 65, 143
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 3 cut(s) 27, 94, 179
BtrI CACGTC 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 2 cut(s) 41, 145
Cfr13I GGNCC 4 cut(s) 70, 85, 93, 177
CseI GACGC 3 cut(s) 71, 117, 172
CviJI RGCY 3 cut(s) 27, 94, 179
CviKI_1 RGCY 3 cut(s) 27, 94, 179
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 70, 85
Eco52I CGGCCG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 89
Esp3I CGTCTC 2 cut(s) 112, 155
FaqI GGGAC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
GlaI GCGC 2 cut(s) 40, 144
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 3 cut(s) 27, 94, 179
HapII CCGG 1 cut(s) 175
HgaI GACGC 3 cut(s) 71, 117, 172
HhaI GCGC 2 cut(s) 41, 145
Hin1I GRCGYC 2 cut(s) 128, 164
Hin6I GCGC 2 cut(s) 39, 143
HinP1I GCGC 2 cut(s) 39, 143
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 121
Hpy99I CGWCG 3 cut(s) 115, 133, 172
HpyAV CCTTC 2 cut(s) 106, 151
HpyCH4IV ACGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 134, 180
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 2 cut(s) 128, 164
HspAI GCGC 2 cut(s) 39, 143
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 4 cut(s) 68, 76, 103, 139
MaeII ACGT 1 cut(s) 170
MalI GATC 1 cut(s) 34
MbiI CCGCTC 1 cut(s) 102
MboI GATC 1 cut(s) 32
MluI ACGCGT 1 cut(s) 63
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 2 cut(s) 91, 176
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 3 cut(s) 41, 65, 143
MwoI GCNNNNNNNGC 3 cut(s) 36, 134, 180
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 32
NlaIV GGNNCC 2 cut(s) 71, 87
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 147
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 29
Ple19I CGATCG 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 71, 87
PspPI GGNCC 4 cut(s) 70, 85, 93, 177
PvuI CGATCG 1 cut(s) 35
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 4 cut(s) 70, 85, 93, 177
ScrFI CCNGG 2 cut(s) 91, 176
SetI ASST 1 cut(s) 173
SinI GGWCC 2 cut(s) 70, 85
SsiI CCGC 2 cut(s) 28, 100
StyD4I CCNGG 2 cut(s) 89, 174
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 45, 150
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 87
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 70, 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.