Prupe.6G066300_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000537
Physical Location & Seq
Reverse (-)
4575267 .. 4576386
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G066300.1

Sequence Viewer

Length: 486 bp
ATGTCGATCATTCCCAGCTTCCGACGAGGCAGCATTTTCGACCCTTTCTCTCTCGATGTCTGGGACCCATTCAAGGATTTCCCATTCCCTTCCTCTTCATCACTCTCCACATTCCCTGAATTTTCCGAAAATTCAGCTTTCCTGAACACGAGGATCGACTGGAAGGAGACCCCGGAAGCCCACTTGTTCAAGGCCGACCTTCCGGGGCTGAAGAAAGAAGAGGTGAAGGTGGAGGTTGAAGACAATAGGGTGCTTCAGATCAGCGGAGAGAGGAACGTAGAGAAGGAGGACAAGAACGACAAGTGGCACAGAGTGGAGCGCAGCAGCGGCAAGTTCTTGAGGAGGTTTCAGCTTCCTGAAAACGCAAAGTTGGACGAGATTAAGGCTGCAATGGAGAATGGGGTTCTGAGTGTCACTGTGCCAAAGGCAGATGTGAAGAAGGCTGAAGTCAAAGCCATTGAAATCTCTGGCAAAGAAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

162

Amino Acids

18.43

Weight (kDa)

5.57

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07400 AT2G29500
fragaria_vesca FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 264, 327
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 119, 130
AcuI CTGAAG 3 cut(s) 230, 239, 465
AdeI CACNNNGTG 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 4 cut(s) 73, 190, 239, 461
AluBI AGCT 3 cut(s) 18, 137, 352
AluI AGCT 3 cut(s) 18, 137, 352
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 161
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 4 cut(s) 30, 321, 324, 386
ApoI RAATTY 2 cut(s) 119, 130
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 2 cut(s) 173, 204
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 64
BauI CACGAG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 42, 333, 336, 373
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcnI CCSGG 2 cut(s) 173, 204
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 5 cut(s) 31, 322, 325, 328, 387
BlsI GCNGC 5 cut(s) 32, 323, 326, 329, 388
Bme1390I CCNGG 2 cut(s) 173, 204
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 65, 66
BmrFI CCNGG 2 cut(s) 173, 204
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 358
BpuMI CCSGG 2 cut(s) 173, 204
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 171, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 171, 203
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 355
BseXI GCAGC 4 cut(s) 42, 333, 336, 373
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 194
BsiSI CCGG 2 cut(s) 173, 203
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 3 cut(s) 6, 153, 258
BspACI CCGC 2 cut(s) 264, 327
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 399
BspLI GGNNCC 2 cut(s) 65, 66
BspPI GGATC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 171, 203
BssMI GATC 3 cut(s) 6, 153, 258
BssSI CACGAG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 100, 213
BstDEI CTNAG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 9, 156, 261
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 6, 153, 258
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 171, 202
BstV1I GCAGC 4 cut(s) 42, 333, 336, 373
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 414
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 64
CviJI RGCY 9 cut(s) 18, 137, 179, 194, 208, 352, 386, 443, 455
CviKI_1 RGCY 9 cut(s) 18, 137, 179, 194, 208, 352, 386, 443, 455
DdeI CTNAG 1 cut(s) 407
DpnI GATC 3 cut(s) 8, 155, 260
DpnII GATC 3 cut(s) 6, 153, 258
DraIII CACNNNGTG 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 100, 213
EarI CTCTTC 2 cut(s) 100, 213
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 3 cut(s) 230, 239, 465
EcoO109I RGGNCCY 1 cut(s) 64
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 5 cut(s) 31, 322, 325, 328, 387
Fsp4HI GCNGC 5 cut(s) 31, 322, 325, 328, 387
GlaI GCGC 1 cut(s) 320
GluI GCNGC 5 cut(s) 31, 322, 325, 328, 387
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 173, 203
HhaI GCGC 1 cut(s) 321
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HpaII CCGG 2 cut(s) 173, 203
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 23, 127, 258, 408
Hpy188III TCNNGA 4 cut(s) 53, 142, 337, 356
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 6 cut(s) 99, 157, 209, 220, 277, 433
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 1 cut(s) 276
HspAI GCGC 1 cut(s) 319
KflI GGGWCCC 1 cut(s) 64
Kzo9I GATC 3 cut(s) 6, 153, 258
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 9 cut(s) 28, 46, 129, 145, 155, 186, 216, 369, 453
Lsp1109I GCAGC 4 cut(s) 42, 333, 336, 373
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 8, 155, 260
MboI GATC 3 cut(s) 6, 153, 258
MboII GAAGA 5 cut(s) 87, 223, 230, 251, 448
MluCI AATT 2 cut(s) 119, 130
MmeI TCCRAC 2 cut(s) 46, 351
MnlI CCTC 9 cut(s) 20, 103, 144, 214, 226, 264, 280, 333, 336
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 2 cut(s) 264, 327
MspI CCGG 2 cut(s) 173, 203
MspR9I CCNGG 2 cut(s) 173, 204
MwoI GCNNNNNNNGC 1 cut(s) 327
NciI CCSGG 2 cut(s) 173, 204
NdeII GATC 3 cut(s) 6, 153, 258
NlaIV GGNNCC 2 cut(s) 65, 66
NmuCI GTSAC 1 cut(s) 412
PkrI GCNGC 5 cut(s) 32, 323, 326, 329, 388
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 65, 66
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 31, 322, 325, 328, 387
Sau3AI GATC 3 cut(s) 6, 153, 258
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 173, 204
SetI ASST 9 cut(s) 20, 139, 201, 225, 231, 237, 279, 347, 354
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 2 cut(s) 119, 130
SsiI CCGC 2 cut(s) 264, 327
StyD4I CCNGG 2 cut(s) 171, 202
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 5, 39, 54, 156
TasI AATT 2 cut(s) 119, 130
TauI GCSGC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 4 cut(s) 30, 321, 324, 386
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 2 cut(s) 119, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.