Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000537

Physical Location & Seq

Genomic Coordinates Reverse (-)

28970024 .. 28970494

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1210800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGCTGATTCCGAACCCATTCGGGCGCCGATCGGGCGTGTTCGACCCGTTTTCACTCGACCTGTGGGACCACCAGGTCCACCACCCGTTCCGCTCACTCTCGGACCTGTCGTCCCGGTCCGAAACGGAGTCGTTCGCCCACGCGCACATCGACTGGAAGGAGACGCCGACGGCGCACGTGTTCAAGGCGGACGTGCCGGGGCTGAGGAAGGAGGAGGTGAAGGTTGAGGTGGAGGACGGCCGGATCCTCCAGATCAGCGGGGAGAGGAAGAGGGAGCAGGAGGAGAAGACGGACACGTGGCACCGGGTGGAGCGCAGCAGCGGGACGTTCACGAGGAGGTTTCGGCTGCCGGAGAAGGCGAGCGTGGAGGAGGTGAGGGCGGGGATGGAAAACGGAGTGCTGACTGTCACTGTGCCTAAGGTGAAGGCCAAGAAGGTGGATGTCAGGTCCATTGAGATCTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009636 GO:0010033 GO:0010035 GO:0010038 GO:0042221 GO:0042493 GO:0042542 GO:0045471 GO:0046677 GO:0046685 GO:0046686 GO:0046688 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

7.08

Isoelectric Point (pI)

66.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	52 - 155	4.7e-30	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07400 AT2G29500
fragaria_vesca	FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica	MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica	Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata	RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora	Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa	Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha	Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana	Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccB1I	GGYRCC	2 cut(s)	27, 303
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	146
AciI	CCGC	5 cut(s)	94, 191, 261, 324, 383
AclWI	GGATC	2 cut(s)	241, 254
AcoI	YGGCCR	1 cut(s)	241
AcvI	CACGTG	2 cut(s)	181, 300
AcyI	GRCGYC	2 cut(s)	28, 167
AdeI	CACNNNGTG	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	180, 297
AgsI	TTSAA	1 cut(s)	187
AhdI	GACNNNNNGTC	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	241, 254
AoxI	GGCC	2 cut(s)	241, 429
ApeKI	GCWGC	3 cut(s)	318, 321, 349
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	4 cut(s)	30, 148, 178, 318
AspS9I	GGNCC	5 cut(s)	70, 79, 106, 120, 450
AsuC2I	CCSGG	3 cut(s)	118, 201, 308
AsuHPI	GGTGA	3 cut(s)	232, 388, 436
AvaII	GGWCC	5 cut(s)	70, 79, 106, 120, 450
AxyI	CCTNAGG	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	27, 303
BauI	CACGAG	1 cut(s)	334
BbrPI	CACGTG	2 cut(s)	181, 300
BbsI	GAAGAC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	330, 333, 336
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	189, 256
BciT130I	CCWGG	1 cut(s)	77
BcnI	CCSGG	3 cut(s)	118, 201, 308
BcoDI	GTCTC	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	3 cut(s)	319, 322, 350
BlsI	GCNGC	3 cut(s)	320, 323, 351
Bme1390I	CCNGG	4 cut(s)	77, 118, 201, 308
Bme18I	GGWCC	5 cut(s)	70, 79, 106, 120, 450
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	5 cut(s)	70, 79, 106, 120, 450
BmiI	GGNNCC	4 cut(s)	29, 71, 248, 305
BmrFI	CCNGG	4 cut(s)	77, 118, 201, 308
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	118, 201, 308
BsaAI	YACGTR	2 cut(s)	181, 300
BsaHI	GRCGYC	2 cut(s)	28, 167
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	393, 448
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	4 cut(s)	230, 299, 352, 386
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	330, 333, 336
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	2 cut(s)	35, 244
BshFI	GGCC	2 cut(s)	243, 431
BshNI	GGYRCC	2 cut(s)	27, 303
BsiEI	CGRYCG	2 cut(s)	35, 244
BsiSI	CCGG	5 cut(s)	118, 200, 244, 307, 353
BslFI	GGGAC	3 cut(s)	83, 100, 340
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	83, 100, 340
BsnI	GGCC	2 cut(s)	243, 431
Bsp143I	GATC	4 cut(s)	32, 246, 255, 459
BspACI	CCGC	5 cut(s)	94, 191, 261, 324, 383
BspANI	GGCC	2 cut(s)	243, 431
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	4 cut(s)	29, 71, 248, 305
BspPI	GGATC	2 cut(s)	241, 254
BspT107I	GGYRCC	2 cut(s)	27, 303
BsrBI	CCGCTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	4 cut(s)	32, 246, 255, 459
BssNI	GRCGYC	2 cut(s)	28, 167
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	409, 415
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	2 cut(s)	28, 167
BstBAI	YACGTR	2 cut(s)	181, 300
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	206, 420
BstF5I	GGATG	2 cut(s)	393, 448
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	4 cut(s)	30, 148, 178, 318
BstKTI	GATC	4 cut(s)	35, 249, 258, 462
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	32, 246, 255, 459
BstMCI	CGRYCG	2 cut(s)	35, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 175
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	75, 116, 199, 306
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	330, 333, 336
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	246, 459
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	2 cut(s)	246, 459
BstZI	CGGCCG	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	243, 431
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	393, 448
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	4 cut(s)	30, 148, 178, 318
Cfr13I	GGNCC	5 cut(s)	70, 79, 106, 120, 450
CpoI	CGGWCCG	1 cut(s)	120
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	120
CviJI	RGCY	4 cut(s)	205, 243, 349, 431
CviKI_1	RGCY	4 cut(s)	205, 243, 349, 431
DdeI	CTNAG	2 cut(s)	206, 420
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	4 cut(s)	34, 248, 257, 461
DpnII	GATC	4 cut(s)	32, 246, 255, 459
DraIII	CACNNNGTG	1 cut(s)	310
DrdI	GACNNNNNNGTC	1 cut(s)	77
DriI	GACNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	266
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	241
Eco47I	GGWCC	5 cut(s)	70, 79, 106, 120, 450
Eco52I	CGGCCG	1 cut(s)	241
Eco72I	CACGTG	2 cut(s)	181, 300
Eco81I	CCTNAGG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	75
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	158
FaqI	GGGAC	3 cut(s)	83, 100, 340
FauI	CCCGC	3 cut(s)	254, 317, 376
Fnu4HI	GCNGC	3 cut(s)	319, 322, 350
FokI	GGATG	2 cut(s)	400, 455
Fsp4HI	GCNGC	3 cut(s)	319, 322, 350
GlaI	GCGC	4 cut(s)	29, 147, 177, 317
GluI	GCNGC	3 cut(s)	319, 322, 350
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	243, 431
HapII	CCGG	5 cut(s)	118, 200, 244, 307, 353
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	4 cut(s)	30, 148, 178, 318
Hin1I	GRCGYC	2 cut(s)	28, 167
Hin6I	GCGC	4 cut(s)	28, 146, 176, 316
HinP1I	GCGC	4 cut(s)	28, 146, 176, 316
HinfI	GANTC	2 cut(s)	10, 131
HpaII	CCGG	5 cut(s)	118, 200, 244, 307, 353
HphI	GGTGA	3 cut(s)	232, 388, 436
Hpy166II	GTNNAC	2 cut(s)	82, 333
Hpy188I	TCNGA	3 cut(s)	15, 106, 124
Hpy188III	TCNNGA	2 cut(s)	253, 334
Hpy8I	GTNNAC	2 cut(s)	82, 333
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	6 cut(s)	154, 205, 217, 352, 421, 430
HpyCH4III	ACNGT	2 cut(s)	409, 415
HpyCH4IV	ACGT	4 cut(s)	180, 195, 299, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 175
HpyF3I	CTNAG	2 cut(s)	206, 420
HpySE526I	ACGT	4 cut(s)	180, 195, 299, 329
Hsp92I	GRCGYC	2 cut(s)	28, 167
HspAI	GCGC	4 cut(s)	28, 146, 176, 316
KasI	GGCGCC	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	32, 246, 255, 459
LmnI	GCTCC	2 cut(s)	277, 313
Lsp1109I	GCAGC	3 cut(s)	330, 333, 336
MabI	ACCWGGT	1 cut(s)	75
MaeII	ACGT	4 cut(s)	180, 195, 299, 329
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	34, 248, 257, 461
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	4 cut(s)	32, 246, 255, 459
MboII	GAAGA	2 cut(s)	283, 301
MflI	RGATCY	2 cut(s)	246, 459
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	261, 324
MspI	CCGG	5 cut(s)	118, 200, 244, 307, 353
MspR9I	CCNGG	4 cut(s)	77, 118, 201, 308
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	36, 175
NarI	GGCGCC	1 cut(s)	28
NciI	CCSGG	3 cut(s)	118, 201, 308
NdeII	GATC	4 cut(s)	32, 246, 255, 459
NlaIV	GGNNCC	4 cut(s)	29, 71, 248, 305
NmuCI	GTSAC	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 110, 150
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	320, 323, 351
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	31
PmaCI	CACGTG	2 cut(s)	181, 300
PmlI	CACGTG	2 cut(s)	181, 300
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	2 cut(s)	181, 300
Psp6I	CCWGG	1 cut(s)	75
PspCI	CACGTG	2 cut(s)	181, 300
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	29, 71, 248, 305
PspPI	GGNCC	5 cut(s)	70, 79, 106, 120, 450
PsuI	RGATCY	2 cut(s)	246, 459
PvuI	CGATCG	1 cut(s)	35
Rsr2I	CGGWCCG	1 cut(s)	120
RsrII	CGGWCCG	1 cut(s)	120
SatI	GCNGC	3 cut(s)	319, 322, 350
Sau3AI	GATC	4 cut(s)	32, 246, 255, 459
Sau96I	GGNCC	5 cut(s)	70, 79, 106, 120, 450
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	4 cut(s)	77, 118, 201, 308
SexAI	ACCWGGT	1 cut(s)	75
SfoI	GGCGCC	1 cut(s)	29
SinI	GGWCC	5 cut(s)	70, 79, 106, 120, 450
SsiI	CCGC	5 cut(s)	94, 191, 261, 324, 383
SspDI	GGCGCC	1 cut(s)	27
StyD4I	CCNGG	4 cut(s)	75, 116, 199, 306
TaaI	ACNGT	2 cut(s)	409, 415
TaiI	ACGT	4 cut(s)	183, 198, 302, 332
TaqI	TCGA	3 cut(s)	45, 60, 153
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	3 cut(s)	318, 321, 349
Tsp45I	GTSAC	1 cut(s)	409
TspGWI	ACGGA	3 cut(s)	143, 308, 411
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	5 cut(s)	70, 79, 106, 120, 450
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.