Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000537

Physical Location & Seq

Genomic Coordinates Forward (+)

46511136 .. 46514187

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCAGATTGCTGTGGTCCTGTGGATTCTTGAGATTGTACTGAGAACTCTTGAGATTGTTGTCCACATTAGAAAACGAACTAACCTAAACCTTAAAACATGTTCTGGAGAACACAGAGTCTCTTCCCAAACTCTTCCAGCGCCCAAAAGCTTCCAGAAACCTCTGTATGATACCCCGGATTCTAAGCTCAGACACCAAACATTGAACAAAATGGCTACACCATTTCTTGCTGGTCTTGCAGTAGCAGCCACAGCTCTTGCTGGTAGATATGGTATCCAGGCGTGGCAAGCATTCAAGGCACGACCACCTAAAATGCGTAAATTTTTTGAAGGTGGTTTTCAGCCGACTATGACTAGAAGGGAAGCAGCTCAGATTCTTGGTCTCAGGGAGAGTGCGCCCCCAGACAAGGTCAAGGAAGCACATCGAAGAGTGATGGTTGCAAATCATCCTGATGCAGGTGGTAGTCATTACCTTGCTTCTAAAATCAATGAGGCTAAAGATGTGATGCTTAGGAAAACAAAGGGCGGTGGATCAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009636 GO:0010033 GO:0010035 GO:0010038 GO:0042221 GO:0042493 GO:0042542 GO:0045471 GO:0046677 GO:0046685 GO:0046686 GO:0046688 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

10.49

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07400 AT2G29500
fragaria_vesca	FvH4_3g35270 FvH4_3g37330 FvH4_3g37360 FvH4_3g38620 FvH4_7g23650
malus_domestica	MD07G1210800.v1.1 MD11G1087100.v1.1 MD11G1088300.v1.1 MD11G1089300.v1.1
prunus_persica	Prupe.2G243400_v2.0.a1 Prupe.6G065900_v2.0.a1 Prupe.6G066100_v2.0.a1 Prupe.6G066200_v2.0.a1 Prupe.6G066300_v2.0.a1 Prupe.6G066400_v2.0.a1 Prupe.6G066500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0368921 RchiOBHm_Chr1g0369001 RchiOBHm_Chr4g0444561 RchiOBHm_Chr5g0063321 RchiOBHm_Chr5g0063331 RchiOBHm_Chr5g0063361 RchiOBHm_Chr5g0067111 RchiOBHm_Chr5g0067191
rosa_laevigata	RLG00000005821 RLG00000027165 RLG00000027176 RLG00000035622 RLG00000035623 RLG00000035626 RLG00000035628 RLG00000035914
rosa_multiflora	Rmu_co8027810.1_g000001 Rmu_sc0000510.1_g000026 Rmu_sc0003839.1_g000004 Rmu_sc0004250.1_g000031 Rmu_sc0004250.1_g000043 Rmu_sc0005045.1_g000005 Rmu_sc0006795.1_g000002 Rmu_sc0008775.1_g000001 Rmu_sc0008775.1_g000012 Rmu_sc0012648.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013950 Rroxscaffold_1G00017380 Rroxscaffold_4G00288090 Rroxscaffold_4G00288200 Rroxscaffold_5G00385020
rosa_rugosa	Rorug01G0345900 Rorug01G0346900 Rorug04G0353900 Rorug05G0356000 Rorug05G0356800 Rorug05G0381900 Rorug05G0382600
rosa_samantha	Rh1AG353800 Rh1BG317300 Rh1CG331800 Rh1DG347900 Rh1DG348200 Rh4BG425600 Rh4CG440300 Rh4DG421200 Rh5AG415700 Rh5AG415800 Rh5AG416000 Rh5AG441900 Rh5BG430600 Rh5BG430700 Rh5BG431100 Rh5CG454100 Rh5CG454200 Rh5CG454400 Rh5DG444400 Rh5DG444500 Rh5DG444700
rosa_wichuraiana	Rw1G031150 Rw1G031260 Rw4G035560 Rw5G039060 Rw5G039080 Rw5G041290 Rw5G041330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	406, 455
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	205, 295, 329
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	150, 187, 254, 368
AluI	AGCT	4 cut(s)	150, 187, 254, 368
Alw26I	GTCTC	2 cut(s)	124, 386
AlwI	GGATC	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	245, 365
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	142, 397
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	257, 377
BccI	CCATC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	124, 386
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	246, 366
BlsI	GCNGC	2 cut(s)	247, 367
Bme1390I	CCNGG	2 cut(s)	176, 278
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	176, 278
BmsI	GCATC	2 cut(s)	442, 495
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	50, 71
BpuMI	CCSGG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 455
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	406, 455
BseMII	CTCAG	4 cut(s)	32, 202, 383, 397
BseXI	GCAGC	2 cut(s)	257, 377
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	406, 455
BsmAI	GTCTC	2 cut(s)	124, 386
BsmI	GAATGC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	530
BspACI	CCGC	1 cut(s)	525
BspCNI	CTCAG	4 cut(s)	33, 201, 382, 396
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	278
Bst6I	CTCTTC	3 cut(s)	127, 138, 421
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	6 cut(s)	41, 183, 188, 369, 383, 509
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 397
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	2 cut(s)	124, 386
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 245, 251, 287, 296
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	174, 276
BstV1I	GCAGC	2 cut(s)	257, 377
BsuI	GTATCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	2 cut(s)	142, 397
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	8 cut(s)	150, 187, 215, 248, 254, 343, 368, 494
CviKI_1	RGCY	8 cut(s)	150, 187, 215, 248, 254, 343, 368, 494
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	6 cut(s)	41, 183, 188, 369, 383, 509
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
Eam1104I	CTCTTC	3 cut(s)	127, 138, 421
EarI	CTCTTC	3 cut(s)	127, 138, 421
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	102
FaiI	YATR	4 cut(s)	100, 168, 270, 350
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	246, 366
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	246, 366
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	141, 396
GluI	GCNGC	2 cut(s)	246, 366
GsuI	CTGGAG	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	143
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	2 cut(s)	142, 397
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	2 cut(s)	140, 395
HinP1I	GCGC	2 cut(s)	140, 395
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	4 cut(s)	25, 117, 179, 373
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	191, 372
Hpy188III	TCNNGA	5 cut(s)	29, 50, 105, 154, 449
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	323, 351
HpyCH4V	TGCA	4 cut(s)	4, 239, 440, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 245, 251, 287, 296
HpyF3I	CTNAG	6 cut(s)	41, 183, 188, 369, 383, 509
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	2 cut(s)	140, 395
Kzo9I	GATC	1 cut(s)	530
Lsp1109I	GCAGC	2 cut(s)	257, 377
LweI	GCATC	2 cut(s)	442, 495
MaeI	CTAG	1 cut(s)	354
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	3 cut(s)	114, 125, 438
MluCI	AATT	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	171, 484
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	176, 278
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	5 cut(s)	236, 245, 251, 287, 296
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	1 cut(s)	102
NspI	RCATGY	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	446
PciI	ACATGT	1 cut(s)	98
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	25, 179, 373
PflFI	GACNNNGTC	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	247, 367
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	246, 366
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	176, 278
SfaNI	GCATC	2 cut(s)	442, 495
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	29, 50
SmoI	CTYRAG	2 cut(s)	29, 50
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	525
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	174, 276
TaqI	TCGA	1 cut(s)	424
TasI	AATT	1 cut(s)	320
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	3 cut(s)	25, 179, 373
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseI	GCWGC	2 cut(s)	245, 365
Tth111I	GACNNNGTC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	102
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.