Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

16176631 .. 16177754

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATAATGGAAGAAGAACTTCAAGAGCGTAACAACAATCTCAGCCTCGACGACATTGATCTTTCTCTCCTCCGTCTCACTTCACCACCGTACGACTACTCTCCTCCATCATCCTTGTTCTCCGCCGATGAAATCACTCCTCCATTGAAACGCGCCTCCCCTGTTTCCGACGAATCCGATCTCCCCAAACGCAGAAAACTCTCCCCTCAAAACCCAATCTTTACCACTTCTCCTCCTCTCTTCACTTCCCCGGAAACACAAACTTCCTCTGTTCATGACACGAGCCGGTACACGAATCTCACTAGCTCTGTTTCGGAGAAGCAAGAAGCGACGCCGTCTGTTACTGATACAGAGACGATGAAGATGGTTAACAAATGCGTAGAGGTGATGAATCGTGGAGAGACTAACTATGCTTATGAGAAGGAGCAAGAGGAGTTGGAAGAAGAAGAAGATTGTGGAGGAGGGATGAGGATAGAGAGATCTGGAGATGGGTTTGTAATTAGATTGAAGTGTAGATGCAGACAAGCTTTTAGGGTTCTTTTCTCTGATGATCATCTCTACTTCAAGCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.77

Weight (kDa)

4.69

Isoelectric Point (pI)

70.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	2 cut(s)	92, 290
AgsI	TTSAA	4 cut(s)	23, 148, 508, 565
AluBI	AGCT	2 cut(s)	306, 527
AluI	AGCT	2 cut(s)	306, 527
Alw26I	GTCTC	3 cut(s)	80, 347, 395
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	75, 397
BauI	CACGAG	1 cut(s)	280
BccI	CCATC	3 cut(s)	115, 358, 482
BceAI	ACGGC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	3 cut(s)	80, 347, 395
BfaI	CTAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 217, 244, 247
Bse118I	RCCGGY	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	2 cut(s)	110, 471
BseJI	GATNNNNATC	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	55
BseRI	GAGGAG	7 cut(s)	59, 93, 129, 222, 225, 446, 474
Bsh1236I	CGCG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	251, 286
BsiWI	CGTACG	1 cut(s)	90
BsmAI	GTCTC	3 cut(s)	80, 347, 395
BsmBI	CGTCTC	2 cut(s)	80, 347
Bsp143I	GATC	4 cut(s)	58, 178, 479, 550
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	4 cut(s)	58, 178, 479, 550
BssNI	GRCGYC	1 cut(s)	332
BssSI	CACGAG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	110, 471
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	4 cut(s)	61, 181, 482, 553
BstMAI	GTCTC	3 cut(s)	80, 347, 395
BstMBI	GATC	4 cut(s)	58, 178, 479, 550
BstSCI	CCNGG	1 cut(s)	249
BstUI	CGCG	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	110, 471
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	285
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	91, 289
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	5 cut(s)	45, 285, 306, 527, 568
CviKI_1	RGCY	5 cut(s)	45, 285, 306, 527, 568
CviQI	GTAC	2 cut(s)	91, 289
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	60, 180, 481, 552
DpnII	GATC	4 cut(s)	58, 178, 479, 550
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	112
Esp3I	CGTCTC	2 cut(s)	80, 347
FaeI	CATG	1 cut(s)	278
FaiI	YATR	3 cut(s)	276, 411, 417
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	550
FokI	GGATG	2 cut(s)	97, 478
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	504
HapII	CCGG	2 cut(s)	251, 286
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	3 cut(s)	173, 295, 391
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	251, 286
HphI	GGTGA	2 cut(s)	75, 397
Hpy166II	GTNNAC	2 cut(s)	291, 370
Hpy188I	TCNGA	4 cut(s)	169, 178, 316, 547
Hpy188III	TCNNGA	3 cut(s)	23, 275, 483
Hpy8I	GTNNAC	2 cut(s)	291, 370
Hpy99I	CGWCG	3 cut(s)	53, 173, 334
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	519
HpyF3I	CTNAG	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	550
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	58, 178, 479, 550
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	4 cut(s)	174, 264, 299, 468
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	29, 340
MalI	GATC	4 cut(s)	60, 180, 481, 552
MboI	GATC	4 cut(s)	58, 178, 479, 550
MboII	GAAGA	8 cut(s)	23, 26, 232, 373, 452, 455, 458, 461
MflI	RGATCY	1 cut(s)	479
MluCI	AATT	1 cut(s)	498
MmeI	TCCRAC	2 cut(s)	192, 417
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	369
MspI	CCGG	2 cut(s)	251, 286
MspR9I	CCNGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	58, 178, 479, 550
NlaIII	CATG	1 cut(s)	278
PagI	TCATGA	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	173, 295, 391
Pfl23II	CGTACG	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	334
PspLI	CGTACG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	479
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	2 cut(s)	92, 290
RsaNI	GTAC	2 cut(s)	91, 289
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	58, 178, 479, 550
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	3 cut(s)	308, 387, 529
SfaNI	GCATC	1 cut(s)	506
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	498
TfiI	GAWTC	3 cut(s)	173, 295, 391
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TspDTI	ATGAA	4 cut(s)	144, 263, 374, 404
TspGWI	ACGGA	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.