Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

16355827 .. 16357577

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAGTTTTCACCTTCATCGTCAAGAGCTCGGGAGGAGAATGGAGCGGGAAGCAATACGAGGGCGACCTTGAGGCCTGTGCTCCTTCTTCCTACGCGCTCCAGAGGATGCTCGTCCAGGCCGCTCTCTCTTCTGACAGCTCCGGTGGCGTCCAGAGCTCCTACTCTCCCGTCACTCCTTCCTCTGCAGTCTTCCAGGTGATTATTGGTGGTGGTGGAGGTGGTGGTGCCTTCATTGGTGGAGGTGCCGCAGCAGCTCCAGCAGGTGGTGCAGCAGCTGCAGCTGCAGAGGCCCCCGCGGCTGAGAAGAAGGAGGAAGAGAAGGAGGAGAGTGATGATGACATGGGATTCTCCCTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

121

Amino Acids

11.92

Weight (kDa)

4.15

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	72 - 120	2.1e-12	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	227, 245
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	2 cut(s)	48, 125
AccII	CGCG	2 cut(s)	98, 299
AciI	CCGC	5 cut(s)	48, 123, 249, 297, 299
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	117, 195
AluBI	AGCT	6 cut(s)	30, 141, 159, 257, 278, 284
AluI	AGCT	6 cut(s)	30, 141, 159, 257, 278, 284
Alw21I	GWGCWC	3 cut(s)	32, 85, 161
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	75, 120, 291
ApeKI	GCWGC	7 cut(s)	251, 254, 272, 275, 278, 281, 284
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	4, 211
AvaI	CYCGRG	1 cut(s)	31
BanI	GGYRCC	2 cut(s)	227, 245
BanII	GRGCYC	2 cut(s)	32, 161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	32, 85, 161
BbvI	GCAGC	7 cut(s)	263, 265, 266, 271, 284, 287, 293
BciT130I	CCWGG	2 cut(s)	119, 197
BfmI	CTRYAG	3 cut(s)	186, 279, 285
BfuAI	ACCTGC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	119, 197
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	229, 247, 294
BmrFI	CCNGG	2 cut(s)	119, 197
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	86, 243
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	119, 197
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	51, 341
BseXI	GCAGC	7 cut(s)	263, 265, 266, 271, 284, 287, 293
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	2 cut(s)	98, 299
BshFI	GGCC	3 cut(s)	77, 122, 293
BshNI	GGYRCC	2 cut(s)	227, 245
BsiHKAI	GWGCWC	3 cut(s)	32, 85, 161
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	266
BsnI	GGCC	3 cut(s)	77, 122, 293
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	32, 85, 161
BspACI	CCGC	5 cut(s)	48, 123, 249, 297, 299
BspANI	GGCC	3 cut(s)	77, 122, 293
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	98, 299
BspLI	GGNNCC	3 cut(s)	229, 247, 294
BspMAI	CTGCAG	3 cut(s)	190, 283, 289
BspMI	ACCTGC	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	227, 245
BsrBI	CCGCTC	2 cut(s)	48, 125
BssECI	CCNNGG	1 cut(s)	297
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	119, 197
Bst6I	CTCTTC	2 cut(s)	136, 312
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	2 cut(s)	269, 278
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	2 cut(s)	98, 299
BstHHI	GCGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	119, 197
BstSCI	CCNGG	2 cut(s)	117, 195
BstSFI	CTRYAG	3 cut(s)	186, 279, 285
BstUI	CGCG	2 cut(s)	98, 299
BstV1I	GCAGC	7 cut(s)	263, 265, 266, 271, 284, 287, 293
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	77, 122, 293
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	292
Cfr42I	CCGCGG	1 cut(s)	300
CseI	GACGC	1 cut(s)	139
CviAII	CATG	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	136, 312
EarI	CTCTTC	2 cut(s)	136, 312
Ecl136II	GAGCTC	2 cut(s)	30, 159
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	32, 161
Eco53kI	GAGCTC	2 cut(s)	30, 159
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	2 cut(s)	30, 159
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	117, 195
EcoT38I	GRGCYC	2 cut(s)	32, 161
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FatI	CATG	1 cut(s)	342
FauI	CCCGC	2 cut(s)	41, 304
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	32, 161
GlaI	GCGC	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	86, 243
HaeIII	GGCC	3 cut(s)	77, 122, 293
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	4, 211
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	4 cut(s)	25, 33, 103, 154
HpyAV	CCTTC	6 cut(s)	25, 96, 189, 241, 304, 316
HpyCH4V	TGCA	4 cut(s)	188, 272, 281, 287
HpyF3I	CTNAG	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	98
KspI	CCGCGG	1 cut(s)	300
LmnI	GCTCC	6 cut(s)	45, 88, 105, 146, 164, 262
Lsp1109I	GCAGC	7 cut(s)	263, 265, 266, 271, 284, 287, 293
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	172
MbiI	CCGCTC	2 cut(s)	48, 125
MboII	GAAGA	5 cut(s)	81, 123, 184, 319, 329
MhlI	GDGCHC	3 cut(s)	32, 85, 161
MseI	TTAA	1 cut(s)	364
MspA1I	CMGCKG	3 cut(s)	278, 284, 299
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	119, 197
MvaI	CCWGG	2 cut(s)	119, 197
MvnI	CGCG	2 cut(s)	98, 299
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	229, 247, 294
NmuCI	GTSAC	1 cut(s)	172
PaqCI	CACCTGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	266
Psp124BI	GAGCTC	2 cut(s)	32, 161
Psp6I	CCWGG	2 cut(s)	117, 195
PspGI	CCWGG	2 cut(s)	117, 195
PspN4I	GGNNCC	3 cut(s)	229, 247, 294
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	3 cut(s)	190, 283, 289
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	2 cut(s)	278, 284
SacI	GAGCTC	2 cut(s)	32, 161
SacII	CCGCGG	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	119, 197
SduI	GDGCHC	3 cut(s)	32, 85, 161
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	3 cut(s)	186, 279, 285
Sfr303I	CCGCGG	1 cut(s)	300
SgrBI	CCGCGG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	5 cut(s)	48, 123, 249, 297, 299
SstI	GAGCTC	2 cut(s)	32, 161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	117, 195
TauI	GCSGC	3 cut(s)	125, 251, 302
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	7 cut(s)	251, 254, 272, 275, 278, 281, 284
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	7, 223
Van91I	CCANNNNNTGG	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.