pycom13g19860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002328
Physical Location & Seq
Reverse (-)
15795520 .. 15795949
430 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19860.2

Sequence Viewer

Length: 381 bp
ATGAACCACCACCACGACGACCACCACCCGCAGATTCCATCCAAGAACCCAGAACAAGATTCTTCTCTCCCTGCAGCTTCTTCTGGCTACCGCAAGATCTCCCTCCCCCTACTCCGCCTCTGCATCTCCTACCCTTACAACCCTCCGTCTGCGTCCACCGCCAACAACCCATTTGAGCACTCTCTTCCTGCCTCTCTTTACTACGTCCCATTCCCATCACCGGTCCTGCCTCCTCTTCCTCCACCGCACACTCTCCGCCGCTCCATCTCGGATCTCAACCACTCTCCGGCCAAGACCTCGTCCCGCTCCTCCACCTCCTCCCAAGACTTCCACTTCTCCACCGACTTGGACACACCCCGATTCCAAGGTAATACCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.98

Weight (kDa)

8.0

Isoelectric Point (pI)

74.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 261, 306
AciI CCGC 8 cut(s) 29, 91, 115, 159, 245, 256, 259, 304
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 220, 286
AgeI ACCGGT 1 cut(s) 220
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 1 cut(s) 279
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 74
AsiGI ACCGGT 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 46, 223, 272
BfmI CTRYAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 96
BisI GCNGC 2 cut(s) 75, 259
BlsI GCNGC 2 cut(s) 76, 260
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 286
Bse118I RCCGGY 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 220, 286
BseRI GAGGAG 3 cut(s) 222, 298, 307
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 290
BshTI ACCGGT 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 221, 287
BslFI GGGAC 2 cut(s) 191, 286
BslI CCNNNNNNNGG 2 cut(s) 220, 286
BsmFI GGGAC 2 cut(s) 191, 286
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 96, 271
BspACI CCGC 8 cut(s) 29, 91, 115, 159, 245, 256, 259, 304
BspANI GGCC 1 cut(s) 290
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 279
BsrBI CCGCTC 2 cut(s) 261, 306
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 2 cut(s) 96, 271
BssT1I CCWWGG 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 189, 240
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 2 cut(s) 99, 274
BstMBI GATC 2 cut(s) 96, 271
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 96, 271
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 2 cut(s) 96, 271
BsuRI GGCC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 141
CspAI ACCGGT 1 cut(s) 220
CviJI RGCY 3 cut(s) 77, 87, 290
CviKI_1 RGCY 3 cut(s) 77, 87, 290
DpnI GATC 2 cut(s) 98, 273
DpnII GATC 2 cut(s) 96, 271
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 189, 240
EarI CTCTTC 2 cut(s) 189, 240
EciI GGCGGA 2 cut(s) 104, 245
Eco130I CCWWGG 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaqI GGGAC 2 cut(s) 191, 286
FauI CCCGC 2 cut(s) 36, 311
Fnu4HI GCNGC 2 cut(s) 75, 259
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 75, 259
GluI GCNGC 2 cut(s) 75, 259
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 221, 287
HgaI GACGC 1 cut(s) 141
HinfI GANTC 3 cut(s) 34, 59, 360
HpaII CCGG 2 cut(s) 221, 287
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 74, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 204
Kzo9I GATC 2 cut(s) 96, 271
LmnI GCTCC 2 cut(s) 266, 311
LpnPI CCDG 7 cut(s) 63, 69, 84, 201, 234, 239, 300
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 132
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 98, 273
MbiI CCGCTC 2 cut(s) 261, 306
MboI GATC 2 cut(s) 96, 271
MboII GAAGA 4 cut(s) 54, 72, 176, 227
MflI RGATCY 2 cut(s) 96, 271
MhlI GDGCHC 1 cut(s) 180
MspI CCGG 2 cut(s) 221, 287
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 96, 271
PfeI GAWTC 3 cut(s) 34, 59, 360
PflFI GACNNNGTC 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 2 cut(s) 76, 260
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 96, 271
PsyI GACNNNGTC 1 cut(s) 298
SatI GCNGC 2 cut(s) 75, 259
Sau3AI GATC 2 cut(s) 96, 271
Sau96I GGNCC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 79, 207, 299, 317, 370
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 223
SsiI CCGC 8 cut(s) 29, 91, 115, 159, 245, 256, 259, 304
StyI CCWWGG 1 cut(s) 364
TaiI ACGT 1 cut(s) 207
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 3 cut(s) 34, 59, 360
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 135
Tth111I GACNNNGTC 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.