Prupe.1G335500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002328
Physical Location & Seq
Forward (+)
31682911 .. 31684186
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G335500.1

Sequence Viewer

Length: 711 bp
ATGGCTGAATGCAGTTACCAGAACATTAAGAACCCACAACCAGAACCAGAAGATGAAGAAGAAGAATACACAGCGGTGAAAGAGAAGCTTGATCTCCCTCCTGATCCTCTTCTTCGCCGCTGCAGTTCCGAACGCTTCAACCCAACTTCTCCTCCTCCTCCCCCATTTTATTCTTTTAATTCTCATCACAATCAGCTGCAGTGCCCCAACGCAGCCTCTCCTGCCTCTGCCTCAACAGATAAAGCCTCTGGCGCGGCTGCTCTCTCTTCCTATGCCTCCACACTCCGCCGCTCCGTTTCCAATCCCAAGCCTTCTTCGTGTTCGCCTGCTCTCAAAACCTTCTCCCGTCAATCCTCCTCCTCCTCTGGTGACGAAGACGACAACGACGACGCCACTCCCAATTCTAAGAGGCTTAGAAGGATAAAATATCGCGTCAGAGAGATGAGCCTGTGGTTCCAACAAGTCATGCTTGAAAATGAAGATGATGACGAGGAAGAAGAAGAAGAACTGGAACTGGAACCTCCTCAAGAACAACATCATCAACAAAATGGAGACACTACTGAGTTGCAGGTCGATAGTGACATAAATTTTGCAGAATCTGTGAGCGTGGAGAGGATGGGGGATGGCTTAGTCATTCATTTCAGGTGCCACTGTGGCGTCCCCTATCAGTTCCTTCTTGCTGGGGGCAACTGCTACTACAAGCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

4.63

Isoelectric Point (pI)

82.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 645
AccBSI CCGCTC 1 cut(s) 291
AccII CGCG 2 cut(s) 254, 432
AciI CCGC 5 cut(s) 74, 118, 254, 286, 289
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 586
AcyI GRCGYC 2 cut(s) 390, 657
AgsI TTSAA 2 cut(s) 139, 473
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 3 cut(s) 88, 196, 703
AluI AGCT 3 cut(s) 88, 196, 703
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 599
ApeKI GCWGC 4 cut(s) 120, 196, 212, 257
ApoI RAATTY 1 cut(s) 586
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 88, 380
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 4 cut(s) 107, 183, 224, 244
BccI CCATC 2 cut(s) 610, 617
BcoDI GTCTC 1 cut(s) 546
BfmI CTRYAG 2 cut(s) 121, 197
BfuAI ACCTGC 1 cut(s) 559
BglI GCCNNNNNGGC 1 cut(s) 654
BisI GCNGC 7 cut(s) 118, 121, 197, 213, 255, 258, 289
BlsI GCNGC 7 cut(s) 119, 122, 198, 214, 256, 259, 290
BmiI GGNNCC 3 cut(s) 455, 519, 647
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 510
BsaHI GRCGYC 2 cut(s) 390, 657
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 2 cut(s) 513, 519
BseGI GGATG 2 cut(s) 621, 628
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 2 cut(s) 513, 519
BseRI GAGGAG 7 cut(s) 141, 144, 147, 346, 349, 352, 513
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 4 cut(s) 107, 183, 224, 244
BseYI CCCAGC 1 cut(s) 680
Bsh1236I CGCG 2 cut(s) 254, 432
BshNI GGYRCC 1 cut(s) 645
BslFI GGGAC 1 cut(s) 644
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 91, 103
BspACI CCGC 5 cut(s) 74, 118, 254, 286, 289
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 2 cut(s) 254, 432
BspLI GGNNCC 3 cut(s) 455, 519, 647
BspMAI CTGCAG 2 cut(s) 125, 201
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 645
BsrBI CCGCTC 1 cut(s) 291
BsrI ACTGG 2 cut(s) 513, 519
BssMI GATC 2 cut(s) 91, 103
BssNI GRCGYC 2 cut(s) 390, 657
Bst4CI ACNGT 1 cut(s) 653
Bst6I CTCTTC 2 cut(s) 114, 271
BstACI GRCGYC 2 cut(s) 390, 657
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 4 cut(s) 405, 413, 561, 628
BstF5I GGATG 2 cut(s) 621, 628
BstFNI CGCG 2 cut(s) 254, 432
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 94, 106
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 2 cut(s) 91, 103
BstMWI GCNNNNNNNGC 3 cut(s) 221, 251, 654
BstSFI CTRYAG 2 cut(s) 121, 197
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 2 cut(s) 254, 432
BstV1I GCAGC 4 cut(s) 107, 183, 224, 244
BstV2I GAAGAC 1 cut(s) 381
BtsCI GGATG 2 cut(s) 621, 628
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 649
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 1 cut(s) 254
CseI GACGC 3 cut(s) 398, 421, 646
CviAII CATG 2 cut(s) 466, 706
DdeI CTNAG 4 cut(s) 405, 413, 561, 628
DpnI GATC 2 cut(s) 93, 105
DpnII GATC 2 cut(s) 91, 103
Eam1104I CTCTTC 2 cut(s) 114, 271
EarI CTCTTC 2 cut(s) 114, 271
EciI GGCGGA 1 cut(s) 275
FaeI CATG 2 cut(s) 469, 709
FaiI YATR 4 cut(s) 273, 467, 584, 707
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 453, 485
FaqI GGGAC 1 cut(s) 644
FatI CATG 2 cut(s) 465, 705
Fnu4HI GCNGC 7 cut(s) 118, 121, 197, 213, 255, 258, 289
FokI GGATG 2 cut(s) 628, 635
Fsp4HI GCNGC 7 cut(s) 118, 121, 197, 213, 255, 258, 289
GlaI GCGC 1 cut(s) 253
GluI GCNGC 7 cut(s) 118, 121, 197, 213, 255, 258, 289
GsaI CCCAGC 1 cut(s) 684
HgaI GACGC 3 cut(s) 398, 421, 646
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 2 cut(s) 390, 657
Hin1II CATG 2 cut(s) 469, 709
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 596
HphI GGTGA 2 cut(s) 88, 380
Hpy188I TCNGA 2 cut(s) 130, 437
Hpy188III TCNNGA 2 cut(s) 101, 527
Hpy99I CGWCG 2 cut(s) 389, 392
HpyAV CCTTC 4 cut(s) 321, 349, 411, 683
HpyCH4III ACNGT 1 cut(s) 653
HpyCH4V TGCA 5 cut(s) 12, 123, 199, 568, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 251, 654
HpyF3I CTNAG 4 cut(s) 405, 413, 561, 628
Hsp92I GRCGYC 2 cut(s) 390, 657
Hsp92II CATG 2 cut(s) 469, 709
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 91, 103
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 4 cut(s) 107, 183, 224, 244
MaeIII GTNAC 3 cut(s) 14, 368, 578
MalI GATC 2 cut(s) 93, 105
MbiI CCGCTC 1 cut(s) 291
MboI GATC 2 cut(s) 91, 103
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 3 cut(s) 178, 400, 586
MmeI TCCRAC 1 cut(s) 481
MseI TTAA 2 cut(s) 27, 177
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 3 cut(s) 74, 120, 196
Mva1269I GAATGC 1 cut(s) 14
MvnI CGCG 2 cut(s) 254, 432
MwoI GCNNNNNNNGC 3 cut(s) 221, 251, 654
NdeII GATC 2 cut(s) 91, 103
NlaIII CATG 2 cut(s) 469, 709
NlaIV GGNNCC 3 cut(s) 455, 519, 647
NmuCI GTSAC 2 cut(s) 368, 578
OliI CACNNNNGTG 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 596
PkrI GCNGC 7 cut(s) 119, 122, 198, 214, 256, 259, 290
PspFI CCCAGC 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 455, 519, 647
PstI CTGCAG 2 cut(s) 125, 201
PstNI CAGNNNCTG 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 27, 177
SatI GCNGC 7 cut(s) 118, 121, 197, 213, 255, 258, 289
Sau3AI GATC 2 cut(s) 91, 103
SduI GDGCHC 1 cut(s) 206
SetI ASST 7 cut(s) 90, 198, 341, 523, 573, 647, 705
SfcI CTRYAG 2 cut(s) 121, 197
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 3 cut(s) 178, 400, 586
SsiI CCGC 5 cut(s) 74, 118, 254, 286, 289
TaaI ACNGT 1 cut(s) 653
TaqI TCGA 1 cut(s) 573
TasI AATT 3 cut(s) 178, 400, 586
TauI GCSGC 3 cut(s) 120, 257, 291
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 2 cut(s) 27, 177
Tru9I TTAA 2 cut(s) 27, 177
TscAI CASTG 2 cut(s) 206, 656
TseFI GTSAC 2 cut(s) 368, 578
TseI GCWGC 4 cut(s) 120, 196, 212, 257
Tsp45I GTSAC 2 cut(s) 368, 578
TspDTI ATGAA 3 cut(s) 69, 492, 626
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 206, 656
XapI RAATTY 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.