Rw6G022840

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
44980213 .. 44980496
284 bp
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UTR
Exon/CDS
Intron
Rw6G022840.1

Sequence Viewer

Length: 216 bp
ATGAAGGGTCGCCTGAAGGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAATATTTGGAACAAGATGAAGAACTTGAAACTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTCCCAATGATACTTCTACTGAGTTGTCGGTTGCTTCTTCCCGGCAGAAGTTGAAGTCCAAAGCCTGCTACATGAACATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.26

Weight (kDa)

4.49

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 83, 184
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 172
BbvI GCAGC 1 cut(s) 52
BcnI CCSGG 1 cut(s) 172
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 81, 108
BpuMI CCSGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 55
BsiSI CCGG 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 38, 196
BstDEI CTNAG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 38, 196
CviAII CATG 2 cut(s) 46, 202
CviJI RGCY 2 cut(s) 43, 194
CviKI_1 RGCY 2 cut(s) 43, 194
DdeI CTNAG 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 35
FaeI CATG 2 cut(s) 49, 205
FaiI YATR 2 cut(s) 47, 203
FatI CATG 2 cut(s) 45, 201
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 1 cut(s) 172
Hin1II CATG 2 cut(s) 49, 205
HpaII CCGG 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 98, 107, 125
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 49, 205
LpnPI CCDG 6 cut(s) 22, 26, 72, 120, 185, 208
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 3 cut(s) 65, 86, 159
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 172
NlaIII CATG 2 cut(s) 49, 205
PkrI GCNGC 1 cut(s) 42
SatI GCNGC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 172
SetI ASST 1 cut(s) 45
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 2 cut(s) 96, 123
SmoI CTYRAG 2 cut(s) 96, 123
SspI AATATT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 170
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 17, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.