RchiOBHm_Chr4g0396051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002328
Physical Location & Seq
Reverse (-)
12085302 .. 12087106
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36843

Sequence Viewer

Length: 744 bp
ATGCTGACCACCACCACCTGTGGCTCTGAACCCATCACCATGAAAACGTCGCCGCCGCCGCCGTCCTCCTCCTCAGCTCCAGACCCATCTTCTCTCCTCGGTTTCGGCTACTCCAAGATCTCCCTCCCTCTCCACCACCACCACCACCCTCAACCCCTTCTCCGCCGCTGCATTTCCGACCCCTACACTCCTCCGGCGCCGCCGCAAACCAACCCATTTCTCTCCGCCGGTCACTCTCCCGATCGCAACCCACCCAAGACTTCCTCCCCGTTCCCGACCCACTTCAACTCCTCCCTCCCGCCTCTCCCTCCGCCGCAGGCGCCGACCCTCCGCCGCTCCGTCTCCGATCTCAACCCCTCTCCGGCCAAGACCTTCTCCCGCTCCTCCAGCTCGAACGAGATGTCCGTCGAGACTGACTCCGACACCCCCAATTCCAAGAGGCTGAAGAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGATGAAGATTTGGAACAGGATGAAGAACTTGAAATTGGAGCCGGTCAAGATATTCCTGACATTGATGCCACTCGAGATATTCCCAATGACACTTCTACTGAGGATAGCAGTGAGAAAGAATTTTCAGAATCTGTGAGTGTGGAGAAGAAGGATGACTCTCTGGTCATTCACTTCAGGTGCCACTGTGACAAAGCCTATCAGTTCCTTCTAAATGGAGGTGACTGCTACTACAAGCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.42

Weight (kDa)

5.58

Isoelectric Point (pI)

72.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
AccB1I GGYRCC 3 cut(s) 196, 319, 678
AccBSI CCGCTC 2 cut(s) 336, 381
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 464, 658
AcyI GRCGYC 2 cut(s) 197, 320
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 2 cut(s) 286, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 4 cut(s) 77, 390, 493, 736
AluI AGCT 4 cut(s) 77, 390, 493, 736
Alw26I GTCTC 2 cut(s) 346, 404
AlwNI CAGNNNCTG 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 2 cut(s) 168, 490
ApoI RAATTY 1 cut(s) 620
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspLEI GCGC 2 cut(s) 199, 322
AsuHPI GGTGA 2 cut(s) 28, 731
AvaI CYCGRG 1 cut(s) 573
BanI GGYRCC 3 cut(s) 196, 319, 678
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 155, 502
BccI CCATC 2 cut(s) 41, 94
BceAI ACGGC 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 346, 404
BfoI RGCGCY 2 cut(s) 200, 323
BglII AGATCT 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 573
BmiI GGNNCC 4 cut(s) 198, 321, 541, 680
BmsI GCATC 1 cut(s) 556
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 2 cut(s) 63, 370
Bpu10I CCTNAGC 1 cut(s) 73
BsaHI GRCGYC 2 cut(s) 197, 320
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse118I RCCGGY 2 cut(s) 227, 542
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 3 cut(s) 456, 526, 658
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 87, 591
BseRI GAGGAG 6 cut(s) 58, 61, 86, 180, 280, 373
BseXI GCAGC 2 cut(s) 155, 502
BsgI GTGCAG 1 cut(s) 505
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 365
BshNI GGYRCC 3 cut(s) 196, 319, 678
BsiEI CGRYCG 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 4 cut(s) 194, 228, 362, 543
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 346, 404
BsmBI CGTCTC 1 cut(s) 346
BsnI GGCC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 573
Bsp143I GATC 3 cut(s) 117, 241, 346
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 2 cut(s) 86, 592
BspLI GGNNCC 4 cut(s) 198, 321, 541, 680
BspT107I GGYRCC 3 cut(s) 196, 319, 678
BsrBI CCGCTC 2 cut(s) 336, 381
BsrFI RCCGGY 2 cut(s) 227, 542
BssAI RCCGGY 2 cut(s) 227, 542
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 117, 241, 346
BssNI GRCGYC 2 cut(s) 197, 320
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 2 cut(s) 197, 320
BstAPI GCANNNNNTGC 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 318, 488
BstDEI CTNAG 2 cut(s) 73, 600
BstF5I GGATG 3 cut(s) 456, 526, 658
BstH2I RGCGCY 2 cut(s) 200, 323
BstHHI GCGC 2 cut(s) 199, 322
BstKTI GATC 3 cut(s) 120, 244, 349
BstMAI GTCTC 2 cut(s) 346, 404
BstMBI GATC 3 cut(s) 117, 241, 346
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 4 cut(s) 58, 319, 387, 496
BstV1I GCAGC 2 cut(s) 155, 502
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 3 cut(s) 456, 526, 658
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 616, 682
Cac8I GCNNGC 2 cut(s) 318, 488
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 2 cut(s) 199, 322
Cfr10I RCCGGY 2 cut(s) 227, 542
CviAII CATG 3 cut(s) 40, 496, 739
DdeI CTNAG 2 cut(s) 73, 600
DinI GGCGCC 2 cut(s) 198, 321
DpnI GATC 3 cut(s) 119, 243, 348
DpnII GATC 3 cut(s) 117, 241, 346
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
EciI GGCGGA 4 cut(s) 152, 214, 300, 320
Eco57I CTGAAG 2 cut(s) 464, 658
Eco88I CYCGRG 1 cut(s) 573
EgeI GGCGCC 2 cut(s) 198, 321
EheI GGCGCC 2 cut(s) 198, 321
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 43, 499, 742
FaiI YATR 3 cut(s) 41, 497, 740
FatI CATG 3 cut(s) 39, 495, 738
FauI CCCGC 2 cut(s) 306, 386
FokI GGATG 3 cut(s) 463, 533, 665
GlaI GCGC 2 cut(s) 198, 321
GsuI CTGGAG 2 cut(s) 63, 370
HaeII RGCGCY 2 cut(s) 200, 323
HaeIII GGCC 1 cut(s) 365
HapII CCGG 4 cut(s) 194, 228, 362, 543
HhaI GCGC 2 cut(s) 199, 322
Hin1I GRCGYC 2 cut(s) 197, 320
Hin1II CATG 3 cut(s) 43, 499, 742
Hin6I GCGC 2 cut(s) 197, 320
HinP1I GCGC 2 cut(s) 197, 320
HinfI GANTC 3 cut(s) 416, 629, 656
HpaII CCGG 4 cut(s) 194, 228, 362, 543
HphI GGTGA 2 cut(s) 28, 731
Hpy188I TCNGA 5 cut(s) 28, 178, 346, 421, 628
Hpy188III TCNNGA 7 cut(s) 80, 239, 274, 409, 548, 557, 575
Hpy99I CGWCG 2 cut(s) 52, 410
HpyAV CCTTC 5 cut(s) 167, 382, 448, 643, 716
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 171, 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 319, 387, 496
HpyF3I CTNAG 2 cut(s) 73, 600
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 2 cut(s) 197, 320
Hsp92II CATG 3 cut(s) 43, 499, 742
HspAI GCGC 2 cut(s) 197, 320
KasI GGCGCC 2 cut(s) 196, 319
Kzo9I GATC 3 cut(s) 117, 241, 346
LmnI GCTCC 4 cut(s) 82, 341, 386, 539
Lsp1109I GCAGC 2 cut(s) 155, 502
LweI GCATC 1 cut(s) 556
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 3 cut(s) 230, 686, 719
MalI GATC 3 cut(s) 119, 243, 348
MbiI CCGCTC 2 cut(s) 336, 381
MboI GATC 3 cut(s) 117, 241, 346
MboII GAAGA 5 cut(s) 81, 457, 518, 536, 658
MflI RGATCY 1 cut(s) 117
MluCI AATT 3 cut(s) 430, 534, 620
Mly113I GGCGCC 2 cut(s) 197, 320
MlyI GAGTC 2 cut(s) 410, 650
MmeI TCCRAC 2 cut(s) 201, 444
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 194, 228, 362, 543
MwoI GCNNNNNNNGC 4 cut(s) 58, 319, 387, 496
NarI GGCGCC 2 cut(s) 197, 320
NdeII GATC 3 cut(s) 117, 241, 346
NlaIII CATG 3 cut(s) 43, 499, 742
NlaIV GGNNCC 4 cut(s) 198, 321, 541, 680
NmuCI GTSAC 3 cut(s) 230, 686, 719
PaeR7I CTCGAG 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 1 cut(s) 629
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 2 cut(s) 410, 650
PluTI GGCGCC 2 cut(s) 200, 323
PpsI GAGTC 2 cut(s) 410, 650
PspN4I GGNNCC 4 cut(s) 198, 321, 541, 680
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 117
PvuI CGATCG 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 38
Sau3AI GATC 3 cut(s) 117, 241, 346
SchI GAGTC 2 cut(s) 410, 650
SetI ASST 9 cut(s) 20, 50, 79, 374, 392, 495, 680, 721, 738
SfaNI GCATC 1 cut(s) 556
SfoI GGCGCC 2 cut(s) 198, 321
Sfr274I CTCGAG 1 cut(s) 573
SlaI CTCGAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 3 cut(s) 430, 534, 620
SspDI GGCGCC 2 cut(s) 196, 319
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 1 cut(s) 50
TaqI TCGA 3 cut(s) 392, 408, 574
TasI AATT 3 cut(s) 430, 534, 620
TauI GCSGC 8 cut(s) 55, 58, 61, 168, 202, 205, 316, 336
TfiI GAWTC 1 cut(s) 629
TscAI CASTG 2 cut(s) 616, 689
TseFI GTSAC 3 cut(s) 230, 686, 719
TseI GCWGC 2 cut(s) 168, 490
Tsp45I GTSAC 3 cut(s) 230, 686, 719
TspDTI ATGAA 4 cut(s) 56, 467, 519, 537
TspGWI ACGGA 2 cut(s) 328, 394
TspRI CASTG 2 cut(s) 616, 689
XapI RAATTY 1 cut(s) 620
XhoI CTCGAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.