Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Forward (+)

5259484 .. 5266788

Gene Structure 7305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026715

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAACGGCCCAACATCAGTGTTGCAGCAAAGGAGGCAGCAGTTGAGAACAAGCGAAGAGTATTCTTTATCAGAGTTTGCTTCTCAATTAGGAGAGCGAGTAGAAAGAAAGGCACCGACACTCCCATTTCCAAGACGCTGAAAAGGATGAAGGGTTGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTGATGCTTGAAGAAGATTTGGAACAAGATGAAGAACTTGAAATTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTTCCAATGGTACTTCTACTGAGAAGTTGAAGTCCAAAGCCTGCTACATGAATATTGAGATTTTGAATGCAGGCTCAAGAGTGTCCATCCTTGATCTTAACAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATATTGTTGTCCCTGTGGCTTCCAGTTTTGGCCTTGGAGAGGATTATAATTACTTAAGGAGATCAATCAGAGAATTTTTGACAGATCAGGTCATATATGTTCTAGACACAAAAACAGATCCAAAAGCTCCCTTTCTGCATAAAGTTGTTGACCCTGAAGACATCGTACAGAAGACTGGATTGGCATACCCACACACATCTCACTGCCTTGCATCTGGTGATTTCTTCTCCGTGACTCAAGAGTTTAATGTACCAACCGCGGCACAAGACAATGATAAGAACATCATGGGTGCCCCGCTGCTTTCACCAAAGGTTTCAACGTTCAGCATGTCTCTGATGGTCTCTATGGGAGGCATCTTCATGTCTACAGTTGGGCTGAGGTTATGGTTTGAGGTTTACAATAGTGGTAATTCAAACTTAGGAACTGTCCATGGGGTAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

291

Amino Acids

32.37

Weight (kDa)

5.7

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	169 - 218	1.6e-13	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccB1I	GGYRCC	2 cut(s)	113, 716
AccI	GTMKAC	1 cut(s)	791
AccII	CGCG	1 cut(s)	686
AciI	CCGC	3 cut(s)	684, 686, 722
AclI	AACGTT	1 cut(s)	746
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	4 cut(s)	289, 385, 594, 678
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflII	CTTAAG	1 cut(s)	481
AgsI	TTSAA	6 cut(s)	200, 230, 307, 343, 744, 840
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 590, 622
AluBI	AGCT	3 cut(s)	190, 554, 868
AluI	AGCT	3 cut(s)	190, 554, 868
Alw26I	GTCTC	2 cut(s)	762, 772
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	8, 457
ApeKI	GCWGC	4 cut(s)	26, 38, 187, 724
ApoI	RAATTY	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	656, 723
BaeGI	GKGCMC	1 cut(s)	721
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BanI	GGYRCC	2 cut(s)	113, 716
BarI	GAAGNNNNNNTAC	2 cut(s)	576, 608
BbsI	GAAGAC	2 cut(s)	591, 605
BbvCI	CCTCAGC	1 cut(s)	803
BbvI	GCAGC	4 cut(s)	38, 50, 199, 711
BccI	CCATC	2 cut(s)	371, 757
BceAI	ACGGC	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	762, 772
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	792
BfrI	CTTAAG	1 cut(s)	481
BisI	GCNGC	5 cut(s)	27, 39, 188, 687, 725
BlsI	GCNGC	5 cut(s)	28, 40, 189, 688, 726
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	115, 718
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	4 cut(s)	183, 253, 647, 789
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	591, 605
Bpu10I	CCTNAGC	1 cut(s)	803
BpuEI	CTTGAG	4 cut(s)	228, 255, 337, 648
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	3 cut(s)	460, 684, 856
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 106, 115, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	392, 450, 607
BseDI	CCNNGG	3 cut(s)	460, 684, 856
BseGI	GGATG	2 cut(s)	153, 363
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	288, 794
BseNI	ACTGG	3 cut(s)	392, 450, 607
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	4 cut(s)	38, 50, 199, 711
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	2 cut(s)	10, 459
BshNI	GGYRCC	2 cut(s)	113, 716
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	2 cut(s)	762, 772
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	10, 459
Bso31I	GGTCTC	1 cut(s)	772
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	4 cut(s)	370, 488, 511, 544
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	3 cut(s)	684, 686, 722
BspANI	GGCC	2 cut(s)	10, 459
BspCNI	CTCAG	2 cut(s)	289, 795
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	2 cut(s)	115, 718
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	2 cut(s)	113, 716
BspTI	CTTAAG	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	772
BsrI	ACTGG	3 cut(s)	392, 450, 607
BssECI	CCNNGG	3 cut(s)	460, 684, 856
BssMI	GATC	4 cut(s)	370, 488, 511, 544
BssT1I	CCWWGG	2 cut(s)	460, 856
Bst4CI	ACNGT	2 cut(s)	796, 853
Bst6I	CTCTTC	1 cut(s)	52
BstAFI	CTTAAG	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	185, 319, 349
BstDEI	CTNAG	3 cut(s)	297, 803, 844
BstDSI	CCRYGG	2 cut(s)	684, 856
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	153, 363
BstFNI	CGCG	1 cut(s)	686
BstKTI	GATC	4 cut(s)	373, 491, 514, 547
BstMAI	GTCTC	2 cut(s)	762, 772
BstMBI	GATC	4 cut(s)	370, 488, 511, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 193
BstNSI	RCATGY	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	1 cut(s)	721
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	4 cut(s)	38, 50, 199, 711
BstV2I	GAAGAC	2 cut(s)	591, 605
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	10, 459
BtgI	CCRYGG	2 cut(s)	684, 856
BtsCI	GGATG	2 cut(s)	153, 363
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	25, 628
Cac8I	GCNNGC	3 cut(s)	185, 319, 349
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	9
Cfr42I	CCGCGG	1 cut(s)	687
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	288, 384, 593, 677
CviAII	CATG	5 cut(s)	325, 712, 754, 787, 857
CviJI	RGCY	9 cut(s)	10, 190, 317, 351, 446, 459, 554, 802, 868
CviKI_1	RGCY	9 cut(s)	10, 190, 317, 351, 446, 459, 554, 802, 868
CviQI	GTAC	4 cut(s)	288, 384, 593, 677
DdeI	CTNAG	3 cut(s)	297, 803, 844
DpnI	GATC	4 cut(s)	372, 490, 513, 546
DpnII	GATC	4 cut(s)	370, 488, 511, 544
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	460, 856
Eco31I	GGTCTC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	460, 856
ErhI	CCWWGG	2 cut(s)	460, 856
FaeI	CATG	5 cut(s)	328, 715, 757, 790, 860
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	5 cut(s)	324, 711, 753, 786, 856
FauI	CCCGC	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	791
Fnu4HI	GCNGC	5 cut(s)	27, 39, 188, 687, 725
FokI	GGATG	2 cut(s)	160, 350
Fsp4HI	GCNGC	5 cut(s)	27, 39, 188, 687, 725
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	5 cut(s)	27, 39, 188, 687, 725
HaeIII	GGCC	2 cut(s)	10, 459
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	328, 715, 757, 790, 860
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	1 cut(s)	661
HphI	GGTGA	2 cut(s)	656, 723
Hpy166II	GTNNAC	3 cut(s)	577, 792, 823
Hpy188I	TCNGA	3 cut(s)	74, 497, 762
Hpy188III	TCNNGA	7 cut(s)	245, 254, 272, 354, 410, 530, 665
Hpy8I	GTNNAC	3 cut(s)	577, 792, 823
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	796, 853
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	5 cut(s)	26, 183, 347, 565, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 193
HpyF3I	CTNAG	3 cut(s)	297, 803, 844
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	5 cut(s)	328, 715, 757, 790, 860
KspI	CCGCGG	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	370, 488, 511, 544
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	4 cut(s)	38, 50, 199, 711
LweI	GCATC	4 cut(s)	183, 253, 647, 789
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	3 cut(s)	238, 394, 658
MalI	GATC	4 cut(s)	372, 490, 513, 546
MboI	GATC	4 cut(s)	370, 488, 511, 544
MboII	GAAGA	8 cut(s)	69, 212, 215, 233, 596, 610, 643, 775
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	5 cut(s)	87, 231, 475, 500, 835
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	6 cut(s)	28, 412, 460, 770, 798, 811
MseI	TTAA	3 cut(s)	375, 482, 672
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	3 cut(s)	190, 686, 724
MspCI	CTTAAG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	2 cut(s)	35, 193
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	4 cut(s)	370, 488, 511, 544
NlaIII	CATG	5 cut(s)	328, 715, 757, 790, 860
NlaIV	GGNNCC	2 cut(s)	115, 718
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	757
PctI	GAATGC	1 cut(s)	349
PkrI	GCNGC	5 cut(s)	28, 40, 189, 688, 726
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PsiI	TTATAA	1 cut(s)	474
Psp1406I	AACGTT	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	115, 718
PspPI	GGNCC	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	4 cut(s)	289, 385, 594, 678
RsaNI	GTAC	4 cut(s)	288, 384, 593, 677
RseI	CAYNNNNRTG	1 cut(s)	785
SacII	CCGCGG	1 cut(s)	687
SaqAI	TTAA	3 cut(s)	375, 482, 672
SatI	GCNGC	5 cut(s)	27, 39, 188, 687, 725
Sau3AI	GATC	4 cut(s)	370, 488, 511, 544
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	655
SduI	GDGCHC	1 cut(s)	721
SetI	ASST	8 cut(s)	192, 519, 556, 741, 749, 809, 822, 870
SfaNI	GCATC	4 cut(s)	183, 253, 647, 789
SfcI	CTRYAG	1 cut(s)	792
Sfr303I	CCGCGG	1 cut(s)	687
SgrBI	CCGCGG	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	5 cut(s)	243, 270, 352, 481, 663
SmoI	CTYRAG	5 cut(s)	243, 270, 352, 481, 663
Sse9I	AATT	5 cut(s)	87, 231, 475, 500, 835
SsiI	CCGC	3 cut(s)	684, 686, 722
SspI	AATATT	2 cut(s)	331, 430
SspMI	CTAG	1 cut(s)	530
StyI	CCWWGG	2 cut(s)	460, 856
TaaI	ACNGT	2 cut(s)	796, 853
TaiI	ACGT	1 cut(s)	749
TasI	AATT	5 cut(s)	87, 231, 475, 500, 835
TauI	GCSGC	1 cut(s)	689
Tru1I	TTAA	3 cut(s)	375, 482, 672
Tru9I	TTAA	3 cut(s)	375, 482, 672
TscAI	CASTG	2 cut(s)	25, 635
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	4 cut(s)	26, 38, 187, 724
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	4 cut(s)	164, 234, 341, 775
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	2 cut(s)	25, 635
Vha464I	CTTAAG	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	791
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.