Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

16221664 .. 16222834

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAACCACCACCACCAGGTTCCATCCAACCACCCAGAACAAGACTCTTCTCTGCCTGCATCATCTTCTGGCTACCGCATGATCTCCCTCCCTCTTCTCCGCCGCTGCATCTCCGACCCCTACAACCCTCCGTCTGCGACCAACCCCAACGATGCATTTGAGCATTCTCTCTCTGCTTCTCGCTGTGGCAGTTCTTTGTGCAACATGACTCCGTCCTACTCTCCTGACCGACTCCACTTCCCCAAGACTCCGTCCCATTCCCCGGCAGCGGTCCTGCCTCCTCTTCCTCCACCCCAGACTCTCCGGCGCTCCGTCTCGGATCTCAACCCCTCTCCGGCCAAGACCTCCTCCCGCTCCTCCACCTCCTCCCAAGATATCCACTTCTCCACCGACATTGACACCCCCAATTCTAAGAATTACAGGATGACGGGGGGAAAGAATTTGCAGAGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.43

Weight (kDa)

8.93

Isoelectric Point (pI)

74.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	354
AciI	CCGC	5 cut(s)	76, 100, 103, 269, 352
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	439
AfiI	CCNNNNNNNGG	4 cut(s)	16, 262, 268, 334
AjnI	CCWGG	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	105, 266
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	92, 278
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	3 cut(s)	103, 106, 267
BlsI	GCNGC	3 cut(s)	104, 107, 268
Bme1390I	CCNGG	2 cut(s)	17, 263
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	17, 263
BmsI	GCATC	3 cut(s)	68, 117, 142
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 262, 268, 334
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	23, 429
BseLI	CCNNNNNNNGG	4 cut(s)	16, 262, 268, 334
BseRI	GAGGAG	4 cut(s)	270, 337, 346, 355
BseXI	GCAGC	2 cut(s)	92, 278
BshFI	GGCC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	263, 304, 335
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	4 cut(s)	16, 262, 268, 334
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	81, 319
BspACI	CCGC	5 cut(s)	76, 100, 103, 269, 352
BspANI	GGCC	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	81, 319
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	3 cut(s)	52, 99, 288
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	23, 429
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	84, 322
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	81, 319
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	15, 261
BstV1I	GCAGC	2 cut(s)	92, 278
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	23, 429
Cac8I	GCNNGC	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	451
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	2 cut(s)	79, 205
CviJI	RGCY	2 cut(s)	72, 338
CviKI_1	RGCY	2 cut(s)	72, 338
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	2 cut(s)	83, 321
DpnII	GATC	2 cut(s)	81, 319
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	3 cut(s)	52, 99, 288
EarI	CTCTTC	3 cut(s)	52, 99, 288
EciI	GGCGGA	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	82, 208
FaiI	YATR	2 cut(s)	80, 206
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	78, 204
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	3 cut(s)	103, 106, 267
FokI	GGATG	2 cut(s)	10, 436
Fsp4HI	GCNGC	3 cut(s)	103, 106, 267
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	103, 106, 267
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	3 cut(s)	263, 304, 335
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	82, 208
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	6 cut(s)	44, 208, 231, 247, 298, 448
HpaII	CCGG	3 cut(s)	263, 304, 335
Hpy188I	TCNGA	2 cut(s)	115, 319
Hpy188III	TCNNGA	1 cut(s)	224
HpyCH4V	TGCA	5 cut(s)	59, 108, 155, 201, 445
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	82, 208
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	81, 319
LmnI	GCTCC	2 cut(s)	314, 359
Lsp1109I	GCAGC	2 cut(s)	92, 278
LweI	GCATC	3 cut(s)	68, 117, 142
MabI	ACCWGGT	1 cut(s)	15
MalI	GATC	2 cut(s)	83, 321
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	2 cut(s)	81, 319
MboII	GAAGA	4 cut(s)	39, 57, 86, 275
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	3 cut(s)	406, 415, 439
MlyI	GAGTC	5 cut(s)	38, 202, 225, 241, 292
MmeI	TCCRAC	2 cut(s)	51, 138
Mph1103I	ATGCAT	1 cut(s)	157
MspA1I	CMGCKG	2 cut(s)	105, 269
MspI	CCGG	3 cut(s)	263, 304, 335
MspR9I	CCNGG	2 cut(s)	17, 263
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	17
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	81, 319
NlaIII	CATG	2 cut(s)	82, 208
NlaIV	GGNNCC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	163
PflFI	GACNNNGTC	2 cut(s)	211, 250
PkrI	GCNGC	3 cut(s)	104, 107, 268
PleI	GAGTC	5 cut(s)	38, 202, 225, 241, 292
PpsI	GAGTC	5 cut(s)	38, 202, 225, 241, 292
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	2 cut(s)	211, 250
SatI	GCNGC	3 cut(s)	103, 106, 267
Sau3AI	GATC	2 cut(s)	81, 319
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	5 cut(s)	38, 202, 225, 241, 292
ScrFI	CCNGG	2 cut(s)	17, 263
SetI	ASST	3 cut(s)	21, 347, 365
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	3 cut(s)	68, 117, 142
SinI	GGWCC	1 cut(s)	271
Sse9I	AATT	3 cut(s)	406, 415, 439
SsiI	CCGC	5 cut(s)	76, 100, 103, 269, 352
StyD4I	CCNGG	2 cut(s)	15, 261
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	406, 415, 439
TauI	GCSGC	1 cut(s)	105
TseI	GCWGC	2 cut(s)	105, 266
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	120, 201, 240, 301
Tth111I	GACNNNGTC	2 cut(s)	211, 250
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.