Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

27398213 .. 27399088

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1182800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAGCCTGTGGTTCCAACAAGTCATGGAAGTCGAAGATCATGATGACGGCGACAAAGAACAACACCATCAAGAACAAGATGAAATGGAGGCACGTCACCCGCTGATCAGGATGCTAATCAGGACACTAACTCTGTCAGCGCTGCTGAGGATGATTGCGAGAGAAAATTTGAAGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

7.26

Weight (kDa)

5.16

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	166
AfeI	AGCGCT	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	95
Aor51HI	AGCGCT	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	14
BmsI	GCATC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	116
BseGI	GGATG	2 cut(s)	117, 156
BseJI	GATNNNNATC	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	37, 105
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	14
BssMI	GATC	2 cut(s)	37, 105
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	117, 156
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	40, 108
BstMBI	GATC	2 cut(s)	37, 105
BstV1I	GCAGC	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	117, 156
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	1 cut(s)	142
CviAII	CATG	2 cut(s)	25, 41
CviJI	RGCY	1 cut(s)	6
CviKI_1	RGCY	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	39, 107
DpnII	GATC	2 cut(s)	37, 105
Eco47III	AGCGCT	1 cut(s)	141
FaeI	CATG	2 cut(s)	28, 44
FaiI	YATR	2 cut(s)	26, 42
FatI	CATG	2 cut(s)	24, 40
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	124, 163
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	143
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	28, 44
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	89
Hpy188III	TCNNGA	4 cut(s)	41, 71, 109, 121
HpyCH4IV	ACGT	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	28, 44
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	37, 105
LpnPI	CCDG	3 cut(s)	20, 94, 106
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	39, 107
MboI	GATC	2 cut(s)	37, 105
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	2 cut(s)	82, 141
MspA1I	CMGCKG	1 cut(s)	103
NdeII	GATC	2 cut(s)	37, 105
NlaIII	CATG	2 cut(s)	28, 44
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	37, 105
SetI	ASST	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	101
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	96
XapI	RAATTY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.