Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Forward (+)

3428104 .. 3429214

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGACTCAAACACCCAACCTTCCACCCACCTCGACTTCGCCGTCAACAACCACTTCTCCATGCTCCGCCTCGACTCCACCTCCAAACCCCATTCCTCCGCCGCCTTGAAACGCCCCTCTCCGCCTCCCTCCCACCAACCCAACCCCAAGAAGGAGAAGCTCTCTCCTCCTCCTCCCCTCTTCCCCGGCTTTTCCAAAATTACCCCTCTCCCTCCTCTCCCCAAATCCCACTCGGGTCTTGCCCGAACCCGACCCCGCAACCCGCTCCGCCGCCGCTGCATTTCCGACCCATTCACCCCTCCTCGCCTTGATTCTCCCTCCGCTCCTCCCGTCCCCAATTCCATTCACTCTCCCGAGAACGACGTCGTCCCCAATTCCGCCGTCACTGCCATCACTTCGCCGCCGTCAGTGATCTCCACGCGCCCGCCACCCCGCCCCACGCTCCACCGCACAGTTTCCGACCCCACCTCTTCCCCCGCCGCCAAATCCGCCTCCCGCGCTTCCTCCAGCTCCGGCGACGGCGACGACGATACCCCCAATACCAAGAGGAGGCTTAAGAGGATCAAAGATCGGTTCAGAGAGATGACGCTGTGGTTTGAACAAGTCATGCTTGAAGATGATGATGAGGAGGAAAAAGTACCAGAAATTCAACAAGAACAAGAAGAAGAGGAACAGATTATCAATACTGAACCCACTGATGACCATGTCCAAGGTCTTGAAAACACTGCCGTCACTAAGGAGGATTGTGATCAAAAGAGGTTTGAGGAATCGGTGAGTGTGGAGAAGGTTGGGGAGTGCATTGTGATGCATTTCAGCTGCCACTGTGGGGTTCCCTATCAGTTTCTTCTTGCTGGAGGTAACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.65

Weight (kDa)

6.08

Isoelectric Point (pI)

73.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	369
AccBSI	CCGCTC	2 cut(s)	268, 326
AccII	CGCG	2 cut(s)	424, 501
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	3 cut(s)	154, 552, 829
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	112, 602, 617, 653, 722
AluBI	AGCT	4 cut(s)	163, 513, 819, 877
AluI	AGCT	4 cut(s)	163, 513, 819, 877
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	2 cut(s)	235, 356
ApeKI	GCWGC	2 cut(s)	279, 819
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	426, 503
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	289, 787
AvaI	CYCGRG	2 cut(s)	235, 356
BbvI	GCAGC	2 cut(s)	266, 806
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	5 cut(s)	29, 368, 391, 538, 716
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	7 cut(s)	105, 274, 277, 280, 404, 483, 820
BlsI	GCNGC	7 cut(s)	106, 275, 278, 281, 405, 484, 821
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	2 cut(s)	235, 356
BmiI	GGNNCC	1 cut(s)	834
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	493, 876
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	187, 712
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 68, 74, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 552, 829
Bse8I	GATNNNNATC	1 cut(s)	750
BseDI	CCNNGG	2 cut(s)	187, 712
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	154, 552, 829
BseRI	GAGGAG	8 cut(s)	159, 162, 165, 207, 294, 318, 565, 644
BseXI	GCAGC	2 cut(s)	266, 806
Bsh1236I	CGCG	2 cut(s)	424, 501
BsiHKCI	CYCGRG	2 cut(s)	235, 356
BsiSI	CCGG	2 cut(s)	189, 516
BslFI	GGGAC	2 cut(s)	320, 356
BslI	CCNNNNNNNGG	3 cut(s)	154, 552, 829
BsmFI	GGGAC	2 cut(s)	320, 356
BsoBI	CYCGRG	2 cut(s)	235, 356
Bsp143I	GATC	4 cut(s)	414, 564, 571, 751
BspFNI	CGCG	2 cut(s)	424, 501
BspLI	GGNNCC	1 cut(s)	834
BspPI	GGATC	1 cut(s)	572
BspTI	CTTAAG	1 cut(s)	557
BsrBI	CCGCTC	2 cut(s)	268, 326
BssECI	CCNNGG	2 cut(s)	187, 712
BssMI	GATC	4 cut(s)	414, 564, 571, 751
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	712
Bst4CI	ACNGT	2 cut(s)	457, 827
Bst6I	CTCTTC	3 cut(s)	188, 478, 663
BstACI	GRCGYC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	738
BstFNI	CGCG	2 cut(s)	424, 501
BstHHI	GCGC	2 cut(s)	426, 503
BstKTI	GATC	4 cut(s)	417, 567, 574, 754
BstMBI	GATC	4 cut(s)	414, 564, 571, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	279, 389, 491, 500
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	2 cut(s)	424, 501
BstV1I	GCAGC	2 cut(s)	266, 806
BtsI	GCAGTG	2 cut(s)	387, 726
BtsIMutI	CAGTG	5 cut(s)	387, 417, 696, 726, 823
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	2 cut(s)	426, 503
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	4 cut(s)	64, 610, 707, 880
CviJI	RGCY	6 cut(s)	163, 192, 513, 556, 819, 877
CviKI_1	RGCY	6 cut(s)	163, 192, 513, 556, 819, 877
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	4 cut(s)	416, 566, 573, 753
DpnII	GATC	4 cut(s)	414, 564, 571, 751
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	188, 478, 663
EarI	CTCTTC	3 cut(s)	188, 478, 663
EciI	GGCGGA	6 cut(s)	59, 91, 114, 260, 370, 481
Eco130I	CCWWGG	1 cut(s)	712
Eco88I	CYCGRG	2 cut(s)	235, 356
EcoT14I	CCWWGG	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	4 cut(s)	67, 613, 710, 883
FaiI	YATR	4 cut(s)	65, 611, 708, 881
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	320, 356
FatI	CATG	4 cut(s)	63, 609, 706, 879
FauI	CCCGC	6 cut(s)	266, 273, 435, 443, 487, 506
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	7 cut(s)	105, 274, 277, 280, 404, 483, 820
Fsp4HI	GCNGC	7 cut(s)	105, 274, 277, 280, 404, 483, 820
GlaI	GCGC	2 cut(s)	425, 502
GluI	GCNGC	7 cut(s)	105, 274, 277, 280, 404, 483, 820
GsuI	CTGGAG	2 cut(s)	493, 876
HapII	CCGG	2 cut(s)	189, 516
HgaI	GACGC	1 cut(s)	598
HhaI	GCGC	2 cut(s)	426, 503
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	4 cut(s)	67, 613, 710, 883
Hin6I	GCGC	2 cut(s)	424, 501
HinP1I	GCGC	2 cut(s)	424, 501
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	8, 77, 314, 770
HpaII	CCGG	2 cut(s)	189, 516
HphI	GGTGA	2 cut(s)	289, 787
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	289, 463, 581
Hpy188III	TCNNGA	2 cut(s)	356, 719
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	5 cut(s)	368, 371, 524, 530, 533
HpyAV	CCTTC	3 cut(s)	33, 148, 781
HpyCH4III	ACNGT	2 cut(s)	457, 827
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	282, 801, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	279, 389, 491, 500
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	67, 613, 710, 883
HspAI	GCGC	2 cut(s)	424, 501
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	414, 564, 571, 751
LmnI	GCTCC	5 cut(s)	72, 273, 331, 450, 518
LpnPI	CCDG	5 cut(s)	202, 523, 529, 657, 840
Lsp1109I	GCAGC	2 cut(s)	266, 806
LweI	GCATC	1 cut(s)	798
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	385, 733, 860
MalI	GATC	4 cut(s)	416, 566, 573, 753
MbiI	CCGCTC	2 cut(s)	268, 326
MboI	GATC	4 cut(s)	414, 564, 571, 751
MboII	GAAGA	6 cut(s)	175, 465, 629, 677, 680, 839
MluCI	AATT	4 cut(s)	201, 340, 376, 648
MlyI	GAGTC	2 cut(s)	2, 71
MmeI	TCCRAC	2 cut(s)	312, 486
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	2 cut(s)	279, 819
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	2 cut(s)	189, 516
MspR9I	CCNGG	1 cut(s)	189
MvnI	CGCG	2 cut(s)	424, 501
MwoI	GCNNNNNNNGC	4 cut(s)	279, 389, 491, 500
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	414, 564, 571, 751
NlaIII	CATG	4 cut(s)	67, 613, 710, 883
NlaIV	GGNNCC	1 cut(s)	834
NmuCI	GTSAC	2 cut(s)	385, 733
NsiI	ATGCAT	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 528
PfeI	GAWTC	2 cut(s)	314, 770
PflFI	GACNNNGTC	2 cut(s)	368, 707
PkrI	GCNGC	7 cut(s)	106, 275, 278, 281, 405, 484, 821
PleI	GAGTC	2 cut(s)	2, 71
PpsI	GAGTC	2 cut(s)	2, 71
PspN4I	GGNNCC	1 cut(s)	834
PsyI	GACNNNGTC	2 cut(s)	368, 707
PvuII	CAGCTG	1 cut(s)	819
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	7 cut(s)	105, 274, 277, 280, 404, 483, 820
Sau3AI	GATC	4 cut(s)	414, 564, 571, 751
SchI	GAGTC	2 cut(s)	2, 71
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	4 cut(s)	201, 340, 376, 648
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	2 cut(s)	457, 827
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	36, 75
TasI	AATT	4 cut(s)	201, 340, 376, 648
TauI	GCSGC	5 cut(s)	107, 276, 279, 406, 485
TfiI	GAWTC	2 cut(s)	314, 770
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	5 cut(s)	394, 417, 703, 733, 830
TseFI	GTSAC	2 cut(s)	385, 733
TseI	GCWGC	2 cut(s)	279, 819
Tsp45I	GTSAC	2 cut(s)	385, 733
TspRI	CASTG	5 cut(s)	394, 417, 703, 733, 830
Tth111I	GACNNNGTC	2 cut(s)	368, 707
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	648
ZraI	GACGTC	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.