Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

28169051 .. 28172157

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0266400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTCTTTCTTCCGTTGGAAAATGGAGGAGAACCATAGCAGTCTCAGCAGCAATGGCTCCTCTTCCTCTATCACATACCCGAAGCTTCCGATCAGACGCCGCCTTAGAAGCTCTATCCAAAGCCTCCGACGAAAAAGTCCCCTACTTGCTTCTCTACAACTACCCTTCTTTCTCCGGCGCCTTCTCCGCTCTCTTCGCTCACCTCTTCCACTCTCGCCTTAACCTCCCTCTCCTCTCCCTCCCTTTCTCCTCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTACTTCCTTGATTTTCTTGGCCCCAAAGGATTTGCGGTCGAGTTTGCAAGGAGAGCTTCGTGCGAGGTAATTGCTTTCGATCATCGAAAATCTGTACTACCGGAGATGCCCTCGGATGAGGATTGCCCGGACAATCTCACATTTCGAGTGAATACTGAAAAGAGTAGCTCTAGTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCTGATGTTGAATGTCATAATGGAATGGATGCAAGTTTGTTACAAGTTGAGGACAGGGATCGTGTGGAGATGGTGCTTAAGTACATTGAGGATGGAGATCTCCGTCGCTGGAGCTTACCGGATATCAGGGCGTTTAATATTGGACTTAGTGAATGGCGCTCAAAGTTGAATTGCTTTACTAATCCATACATGTATGAACAGTTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGGAAAGTCATATATATCTGCTCGCCAAAAGGCTGCAAATAAGTTACTGGACAACGCTCTGAAAATAAGGTTGGGCAGAGGATTTTACGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGTGATGAAATTGGCAAGCAACTTAGTGTAAAAAGTGCCGCTGCTGGCCTAAGGCCTATAGGAGCTGTTATATTCATGCAACGAAGAAACCTCAAAATGTGCTTAAGGAGTACTGATACTGCTACTGATACCTGTGAAGTTGCAAAGGAAACTCAAGATGAACATGTCAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

350

Amino Acids

39.14

Weight (kDa)

6.62

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	4 cut(s)	102, 189, 341, 915
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	99, 180
AfaI	GTAC	4 cut(s)	286, 402, 593, 988
AflII	CTTAAG	2 cut(s)	587, 979
AflIII	ACRYGT	2 cut(s)	699, 1039
AgsI	TTSAA	2 cut(s)	521, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	8 cut(s)	87, 113, 362, 474, 508, 624, 857, 941
AluI	AGCT	8 cut(s)	87, 113, 362, 474, 508, 624, 857, 941
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	325, 922, 929
ApeKI	GCWGC	3 cut(s)	50, 779, 917
ApoI	RAATTY	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	182, 669
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	288
AxyI	CCTNAGG	1 cut(s)	926
BanI	GGYRCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbvI	GCAGC	3 cut(s)	62, 766, 904
BccI	CCATC	3 cut(s)	574, 596, 854
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	2 cut(s)	183, 670
BfrI	CTTAAG	2 cut(s)	587, 979
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	5 cut(s)	52, 103, 781, 916, 919
BmcAI	AGTACT	1 cut(s)	988
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	3 cut(s)	60, 181, 328
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	402, 529
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	3 cut(s)	317, 640, 737
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	1014
BpuMI	CCSGG	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	99, 180
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	2 cut(s)	406, 628
Bse1I	ACTGG	3 cut(s)	300, 720, 798
Bse21I	CCTNAGG	1 cut(s)	926
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	4 cut(s)	427, 544, 607, 739
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	300, 720, 798
BseRI	GAGGAG	4 cut(s)	43, 51, 224, 241
BseXI	GCAGC	3 cut(s)	62, 766, 904
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	3 cut(s)	327, 924, 931
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	4 cut(s)	177, 407, 434, 629
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	327, 924, 931
BsoBI	CYCGRG	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	92, 385, 568, 607
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	4 cut(s)	102, 189, 341, 915
BspANI	GGCC	3 cut(s)	327, 924, 931
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	60, 181, 328
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	179
BspTI	CTTAAG	2 cut(s)	587, 979
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	300, 720, 798
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	92, 385, 568, 607
BssNI	GRCGYC	2 cut(s)	99, 180
Bst4CI	ACNGT	1 cut(s)	711
Bst6I	CTCTTC	3 cut(s)	69, 200, 212
BstACI	GRCGYC	2 cut(s)	99, 180
BstAFI	CTTAAG	2 cut(s)	587, 979
BstC8I	GCNNGC	4 cut(s)	510, 769, 893, 922
BstDEI	CTNAG	7 cut(s)	46, 106, 504, 656, 744, 899, 926
BstF5I	GGATG	4 cut(s)	427, 544, 607, 739
BstH2I	RGCGCY	2 cut(s)	183, 670
BstHHI	GCGC	2 cut(s)	182, 669
BstKTI	GATC	4 cut(s)	95, 388, 571, 610
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	92, 385, 568, 607
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
BstNSI	RCATGY	2 cut(s)	703, 1043
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	3 cut(s)	62, 766, 904
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	926
BsuRI	GGCC	3 cut(s)	327, 924, 931
BtsCI	GGATG	4 cut(s)	427, 544, 607, 739
Cac8I	GCNNGC	4 cut(s)	510, 769, 893, 922
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	2 cut(s)	182, 669
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	4 cut(s)	285, 401, 592, 987
CviAII	CATG	3 cut(s)	700, 952, 1040
CviQI	GTAC	4 cut(s)	285, 401, 592, 987
DdeI	CTNAG	7 cut(s)	46, 106, 504, 656, 744, 899, 926
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	94, 387, 570, 609
DpnII	GATC	4 cut(s)	92, 385, 568, 607
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	3 cut(s)	69, 200, 212
EarI	CTCTTC	3 cut(s)	69, 200, 212
Eco147I	AGGCCT	1 cut(s)	931
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	634
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaeI	CATG	3 cut(s)	703, 955, 1043
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	699, 951, 1039
Fnu4HI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
FokI	GGATG	4 cut(s)	434, 551, 614, 746
Fsp4HI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	2 cut(s)	181, 668
GluI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
GsuI	CTGGAG	3 cut(s)	317, 640, 737
HaeII	RGCGCY	2 cut(s)	183, 670
HaeIII	GGCC	3 cut(s)	327, 924, 931
HapII	CCGG	4 cut(s)	177, 407, 434, 629
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	182, 669
Hin1I	GRCGYC	2 cut(s)	99, 180
Hin1II	CATG	3 cut(s)	703, 955, 1043
Hin6I	GCGC	2 cut(s)	180, 667
HinP1I	GCGC	2 cut(s)	180, 667
HindIII	AAGCTT	2 cut(s)	85, 506
HpaII	CCGG	4 cut(s)	177, 407, 434, 629
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	6 cut(s)	92, 97, 130, 421, 807, 871
Hpy188III	TCNNGA	1 cut(s)	1031
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	3 cut(s)	134, 260, 618
HpyAV	CCTTC	3 cut(s)	177, 193, 274
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4V	TGCA	5 cut(s)	353, 542, 782, 955, 1019
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
HpyF3I	CTNAG	7 cut(s)	46, 106, 504, 656, 744, 899, 926
Hsp92I	GRCGYC	2 cut(s)	99, 180
Hsp92II	CATG	3 cut(s)	703, 955, 1043
HspAI	GCGC	2 cut(s)	180, 667
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	92, 385, 568, 607
LmnI	GCTCC	3 cut(s)	64, 621, 938
Lsp1109I	GCAGC	3 cut(s)	62, 766, 904
LweI	GCATC	2 cut(s)	402, 529
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	549, 711, 789
MalI	GATC	4 cut(s)	94, 387, 570, 609
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	4 cut(s)	92, 385, 568, 607
MboII	GAAGA	5 cut(s)	3, 56, 187, 199, 972
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	4 cut(s)	375, 679, 865, 885
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	5 cut(s)	222, 588, 645, 875, 980
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	2 cut(s)	587, 979
MspI	CCGG	4 cut(s)	177, 407, 434, 629
MspR9I	CCNGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	4 cut(s)	92, 385, 568, 607
NlaIII	CATG	3 cut(s)	703, 955, 1043
NlaIV	GGNNCC	3 cut(s)	60, 181, 328
NspI	RCATGY	2 cut(s)	703, 1043
PaeR7I	CTCGAG	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	931
PciI	ACATGT	2 cut(s)	699, 1039
PkrI	GCNGC	5 cut(s)	52, 103, 781, 916, 919
PluTI	GGCGCC	1 cut(s)	183
PscI	ACATGT	2 cut(s)	699, 1039
PspN4I	GGNNCC	3 cut(s)	60, 181, 328
PspPI	GGNCC	1 cut(s)	326
PspXI	VCTCGAGB	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	4 cut(s)	286, 402, 593, 988
RsaNI	GTAC	4 cut(s)	285, 401, 592, 987
SaqAI	TTAA	5 cut(s)	222, 588, 645, 875, 980
SatI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
Sau3AI	GATC	4 cut(s)	92, 385, 568, 607
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	988
ScrFI	CCNGG	1 cut(s)	434
SfaNI	GCATC	2 cut(s)	402, 529
SfcI	CTRYAG	1 cut(s)	933
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	4 cut(s)	288, 587, 979, 1029
SmoI	CTYRAG	4 cut(s)	288, 587, 979, 1029
Sse9I	AATT	4 cut(s)	375, 679, 865, 885
SseBI	AGGCCT	1 cut(s)	931
SsiI	CCGC	4 cut(s)	102, 189, 341, 915
SspDI	GGCGCC	1 cut(s)	179
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	931
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	711
TaqI	TCGA	7 cut(s)	258, 273, 289, 345, 384, 391, 451
TasI	AATT	4 cut(s)	375, 679, 865, 885
TatI	WGTACW	4 cut(s)	284, 400, 591, 986
TauI	GCSGC	2 cut(s)	104, 917
Tru1I	TTAA	5 cut(s)	222, 588, 645, 875, 980
Tru9I	TTAA	5 cut(s)	222, 588, 645, 875, 980
TseI	GCWGC	3 cut(s)	50, 779, 917
TspDTI	ATGAA	4 cut(s)	720, 897, 940, 1050
TspGWI	ACGGA	4 cut(s)	4, 244, 602, 746
Vha464I	CTTAAG	2 cut(s)	587, 979
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	2 cut(s)	703, 1043
XhoI	CTCGAG	1 cut(s)	288
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.