Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

61134311 .. 61135395

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAGACTCAAAGACCCAACCTTCCAGCCTCCTCGACTTCGCCGTCAACAACCACTTCTCCATGCTCCGCCTCGACTCCTCCTCCAAACCCCATTCCTCCGCCGCCTTGAAACGCCCCTCTCCGCCTCCCTCCCACCAACCCAACCCCAAGAAAGAGAAGCTCTCTCCTCCCCCCCTCTTCCCCGGCTTTTCCAAAATTACCCCTCTCCCTCCTCTCCCCAAATCCCACTCGGGTCGAACCCGAACCCGCAACCCGCTCCTCCGCCGCTGCATTTCCGACCCCTTCACCCCTCCTCGCCTTGATTCTCTCTCCGCTCCTCCCGAGAACGAGAACGACGTCGTTCCCAATTCCGCCGTCACTGCCATCACTTCCCCGCCGTCCGTGATCTCCACGCGTCCGCCACCCCGCCCCACGCTCCACCGCACAGTCTCCGACCCCACCTCTTCCCCCGCCGCCAAATCCGCCTCCCGCGCTTCCTCCAGCTCCGGCGACGGCGACGACGATACCCCCAATACCAAGAGGAGGCTTAAGAGGATCAAAGATCGGTTCAGAGAGATGACGCTGTGGTTTGAACAAGTCATGCTTGAAGATGATGAGGAAAAAGTACCAGAAATTCAACAAGAACAAGAAGAAGAGGAACCGATTATCAATAGTACTGAACCCACTGATGACCATGTCCAAGGTCTTGAAAACACTGCAGTCACTAAGGAGGATTGTGATCAAAAGAGGTTTGAGGAATCGGTGAGTGTGGAGAAGGTTGGGGAGTGCATTGTGATCCATTTCAGCTGCCACTGTGGGGTTCCCTATCAGTTTCTTCTTGCTGGAGGTAACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.52

Weight (kDa)

6.09

Isoelectric Point (pI)

67.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	342
AccBSI	CCGCTC	2 cut(s)	259, 317
AccII	CGCG	2 cut(s)	397, 474
AclWI	GGATC	2 cut(s)	545, 772
AcsI	RAATTY	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	2 cut(s)	609, 658
AfiI	CCNNNNNNNGG	2 cut(s)	525, 799
AflII	CTTAAG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	112, 575, 590, 620, 692
AluBI	AGCT	4 cut(s)	163, 486, 789, 847
AluI	AGCT	4 cut(s)	163, 486, 789, 847
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	2 cut(s)	545, 772
Ama87I	CYCGRG	2 cut(s)	232, 323
ApeKI	GCWGC	2 cut(s)	270, 789
ApoI	RAATTY	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	280, 757
AvaI	CYCGRG	2 cut(s)	232, 323
BbvI	GCAGC	2 cut(s)	257, 776
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	4 cut(s)	29, 341, 364, 511
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	699
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	5 cut(s)	105, 268, 271, 456, 790
BlsI	GCNGC	5 cut(s)	106, 269, 272, 457, 791
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	1 cut(s)	186
BmeT110I	CYCGRG	2 cut(s)	232, 323
BmiI	GGNNCC	2 cut(s)	642, 804
BmrFI	CCNGG	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	466, 846
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	184, 682
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 68, 74, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 799
Bse8I	GATNNNNATC	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	184, 682
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	525, 799
BseRI	GAGGAG	9 cut(s)	23, 70, 73, 159, 204, 251, 285, 309, 538
BseXI	GCAGC	2 cut(s)	257, 776
Bsh1236I	CGCG	2 cut(s)	397, 474
BsiHKCI	CYCGRG	2 cut(s)	232, 323
BsiSI	CCGG	2 cut(s)	186, 489
BslI	CCNNNNNNNGG	2 cut(s)	525, 799
BsmAI	GTCTC	1 cut(s)	436
BsoBI	CYCGRG	2 cut(s)	232, 323
Bsp143I	GATC	5 cut(s)	387, 537, 544, 721, 777
BspFNI	CGCG	2 cut(s)	397, 474
BspLI	GGNNCC	2 cut(s)	642, 804
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	2 cut(s)	545, 772
BspTI	CTTAAG	1 cut(s)	530
BsrBI	CCGCTC	2 cut(s)	259, 317
BssECI	CCNNGG	2 cut(s)	184, 682
BssMI	GATC	5 cut(s)	387, 537, 544, 721, 777
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	682
Bst4CI	ACNGT	2 cut(s)	430, 797
Bst6I	CTCTTC	3 cut(s)	185, 451, 630
BstACI	GRCGYC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	708
BstFNI	CGCG	2 cut(s)	397, 474
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	5 cut(s)	390, 540, 547, 724, 780
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	5 cut(s)	387, 537, 544, 721, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 464, 473
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	2 cut(s)	397, 474
BstV1I	GCAGC	2 cut(s)	257, 776
BtsI	GCAGTG	2 cut(s)	360, 696
BtsIMutI	CAGTG	4 cut(s)	360, 666, 696, 793
CfoI	GCGC	1 cut(s)	476
CseI	GACGC	2 cut(s)	386, 571
Csp6I	GTAC	2 cut(s)	608, 657
CviAII	CATG	4 cut(s)	64, 583, 677, 850
CviJI	RGCY	7 cut(s)	30, 163, 189, 486, 529, 789, 847
CviKI_1	RGCY	7 cut(s)	30, 163, 189, 486, 529, 789, 847
CviQI	GTAC	2 cut(s)	608, 657
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	5 cut(s)	389, 539, 546, 723, 779
DpnII	GATC	5 cut(s)	387, 537, 544, 721, 777
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	185, 451, 630
EarI	CTCTTC	3 cut(s)	185, 451, 630
EciI	GGCGGA	7 cut(s)	59, 91, 114, 254, 343, 390, 454
Eco130I	CCWWGG	1 cut(s)	682
Eco88I	CYCGRG	2 cut(s)	232, 323
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	4 cut(s)	67, 586, 680, 853
FaiI	YATR	4 cut(s)	65, 584, 678, 851
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	4 cut(s)	63, 582, 676, 849
FauI	CCCGC	6 cut(s)	257, 264, 384, 416, 460, 479
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	5 cut(s)	105, 268, 271, 456, 790
Fsp4HI	GCNGC	5 cut(s)	105, 268, 271, 456, 790
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	105, 268, 271, 456, 790
GsuI	CTGGAG	2 cut(s)	466, 846
HapII	CCGG	2 cut(s)	186, 489
HgaI	GACGC	2 cut(s)	386, 571
HhaI	GCGC	1 cut(s)	476
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	4 cut(s)	67, 586, 680, 853
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	8, 77, 305, 740
HpaII	CCGG	2 cut(s)	186, 489
HphI	GGTGA	2 cut(s)	280, 757
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	280, 436, 554
Hpy188III	TCNNGA	2 cut(s)	323, 689
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	5 cut(s)	341, 344, 497, 503, 506
HpyAV	CCTTC	3 cut(s)	33, 295, 751
HpyCH4III	ACNGT	2 cut(s)	430, 797
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	273, 701, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 464, 473
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	67, 586, 680, 853
HspAI	GCGC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	5 cut(s)	387, 537, 544, 721, 777
LmnI	GCTCC	5 cut(s)	72, 264, 322, 423, 491
LpnPI	CCDG	6 cut(s)	40, 199, 496, 502, 624, 810
Lsp1109I	GCAGC	2 cut(s)	257, 776
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	3 cut(s)	358, 703, 830
MalI	GATC	5 cut(s)	389, 539, 546, 723, 779
MbiI	CCGCTC	2 cut(s)	259, 317
MboI	GATC	5 cut(s)	387, 537, 544, 721, 777
MboII	GAAGA	6 cut(s)	172, 438, 602, 644, 647, 809
MluCI	AATT	3 cut(s)	198, 349, 615
MluI	ACGCGT	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	2, 71
MmeI	TCCRAC	2 cut(s)	303, 459
MseI	TTAA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	270, 789
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	2 cut(s)	186, 489
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	397, 474
MwoI	GCNNNNNNNGC	3 cut(s)	362, 464, 473
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	387, 537, 544, 721, 777
NlaIII	CATG	4 cut(s)	67, 586, 680, 853
NlaIV	GGNNCC	2 cut(s)	642, 804
NmuCI	GTSAC	2 cut(s)	358, 703
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 336, 501
PfeI	GAWTC	2 cut(s)	305, 740
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	5 cut(s)	106, 269, 272, 457, 791
PleI	GAGTC	2 cut(s)	2, 71
PpsI	GAGTC	2 cut(s)	2, 71
PspN4I	GGNNCC	2 cut(s)	642, 804
PstI	CTGCAG	1 cut(s)	703
PsyI	GACNNNGTC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	2 cut(s)	609, 658
RsaNI	GTAC	2 cut(s)	608, 657
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	5 cut(s)	105, 268, 271, 456, 790
Sau3AI	GATC	5 cut(s)	387, 537, 544, 721, 777
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	2 cut(s)	2, 71
ScrFI	CCNGG	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	198, 349, 615
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	430, 797
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	36, 75, 238
TasI	AATT	3 cut(s)	198, 349, 615
TatI	WGTACW	1 cut(s)	656
TauI	GCSGC	3 cut(s)	107, 270, 458
TfiI	GAWTC	2 cut(s)	305, 740
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	4 cut(s)	367, 673, 703, 800
TseFI	GTSAC	2 cut(s)	358, 703
TseI	GCWGC	2 cut(s)	270, 789
Tsp45I	GTSAC	2 cut(s)	358, 703
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	4 cut(s)	367, 673, 703, 800
Tth111I	GACNNNGTC	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	615
ZraI	GACGTC	1 cut(s)	340
ZrmI	AGTACT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.