Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

4422532 .. 4424532

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGACCTCCACCACCTGTGGCTCTGAGCCCATCTCCATGAAAAGGTCCCCACCTTCTCCCGACGACCCTTCTTCTCTCCTCGGCTTCGGCTACTCCAAGCTCACCCTCCCTCTCCACCACCACCACCACCACCACCAACCCCTCCTCCGCCGCTGCATTTCCGACCCCTACTCCCCTCCGCCGCCGCCGCAGACCAACCCATTTCTCTCCGCCGGCCACTCTCCCGATCTCAACAAGACTACTTCATCTCCTTCCCCGACCCACTTCAACTCCTCCCTGCCGCCTCTTCCTCCGCCGCAGCAGCCGCCGACCCTCCGCCGCTCCGTCTCCGATATCAACCCCTCTCCGGCCCAGGCCTTCTCCCGCTCCTCCAGCTCCAACGATATGTCCGTCGAGACTGACACTGATACTCCCAATTCCAAGAGGCTGAAGAGGATGAAGGGTCGGCTGAAGGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAGGATCTGGAACAAGATGAAGAACTCGAAATCGGAGCCACTCAAGATATGCCTGATATTGATGCCATTCGAGATATTCCCAATGATACTTCCACTGAGGATAGCAGTGAGAAAGAATTTTCAGAATCTGTGAGTGTGGAGAAGAAGGATGACTCTCTGGTCATTCACTTCAGGTGCCACTGTGACAAGGCCTATCAGTTCCTTCTCAATGGAACTGACTGCTACTACAAGCTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.3

Weight (kDa)

5.52

Isoelectric Point (pI)

77.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	666
AccBSI	CCGCTC	2 cut(s)	324, 369
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	3 cut(s)	452, 473, 646
AfiI	CCNNNNNNNGG	2 cut(s)	45, 349
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	4 cut(s)	103, 378, 481, 724
AluI	AGCT	4 cut(s)	103, 378, 481, 724
Alw26I	GTCTC	2 cut(s)	334, 392
AlwI	GGATC	1 cut(s)	504
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	4 cut(s)	217, 351, 357, 681
ApeKI	GCWGC	4 cut(s)	156, 301, 304, 478
ApoI	RAATTY	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	48, 352
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	143, 313, 316, 490
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	334, 392
BfmI	CTRYAG	1 cut(s)	728
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	48, 352
BmiI	GGNNCC	3 cut(s)	50, 529, 668
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	82, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 349
Bse118I	RCCGGY	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	82, 354
BseGI	GGATG	2 cut(s)	444, 646
BseLI	CCNNNNNNNGG	2 cut(s)	45, 349
BseMII	CTCAG	2 cut(s)	18, 579
BseRI	GAGGAG	4 cut(s)	71, 137, 265, 361
BseXI	GCAGC	4 cut(s)	143, 313, 316, 490
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	4 cut(s)	219, 353, 359, 683
BshNI	GGYRCC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	216, 350
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	45, 349
BsmAI	GTCTC	2 cut(s)	334, 392
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	4 cut(s)	219, 353, 359, 683
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	229, 496
BspANI	GGCC	4 cut(s)	219, 353, 359, 683
BspCNI	CTCAG	2 cut(s)	19, 580
BspLI	GGNNCC	3 cut(s)	50, 529, 668
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	666
BsrBI	CCGCTC	2 cut(s)	324, 369
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	82, 354
BssMI	GATC	2 cut(s)	229, 496
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	3 cut(s)	294, 428, 486
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	217, 476
BstDEI	CTNAG	2 cut(s)	27, 588
BstF5I	GGATG	2 cut(s)	444, 646
BstKTI	GATC	2 cut(s)	232, 499
BstMAI	GTCTC	2 cut(s)	334, 392
BstMBI	GATC	2 cut(s)	229, 496
BstMWI	GCNNNNNNNGC	5 cut(s)	190, 304, 307, 375, 484
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	4 cut(s)	143, 313, 316, 490
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	4 cut(s)	219, 353, 359, 683
BtsCI	GGATG	2 cut(s)	444, 646
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	4 cut(s)	405, 585, 604, 670
Cac8I	GCNNGC	2 cut(s)	217, 476
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	48, 352
CviAII	CATG	2 cut(s)	40, 484
DdeI	CTNAG	2 cut(s)	27, 588
DpnI	GATC	2 cut(s)	231, 498
DpnII	GATC	2 cut(s)	229, 496
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	294, 428, 486
EarI	CTCTTC	3 cut(s)	294, 428, 486
EciI	GGCGGA	5 cut(s)	140, 171, 202, 285, 308
Eco147I	AGGCCT	2 cut(s)	359, 683
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	3 cut(s)	452, 473, 646
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	2 cut(s)	43, 487
FaiI	YATR	4 cut(s)	41, 389, 485, 542
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	39, 483
FauI	CCCGC	1 cut(s)	374
FokI	GGATG	2 cut(s)	451, 653
FriOI	GRGCYC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	219, 353, 359, 683
HapII	CCGG	2 cut(s)	216, 350
Hin1II	CATG	2 cut(s)	43, 487
HinfI	GANTC	2 cut(s)	617, 644
HpaII	CCGG	2 cut(s)	216, 350
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	28, 166, 334, 527, 616
Hpy188III	TCNNGA	6 cut(s)	62, 227, 397, 500, 536, 563
Hpy99I	CGWCG	2 cut(s)	68, 398
HpyAV	CCTTC	8 cut(s)	66, 81, 264, 370, 436, 448, 631, 704
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4V	TGCA	2 cut(s)	159, 474
HpyF10VI	GCNNNNNNNGC	5 cut(s)	190, 304, 307, 375, 484
HpyF3I	CTNAG	2 cut(s)	27, 588
Hsp92II	CATG	2 cut(s)	43, 487
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	229, 496
LmnI	GCTCC	5 cut(s)	329, 374, 383, 527, 729
Lsp1109I	GCAGC	4 cut(s)	143, 313, 316, 490
LweI	GCATC	1 cut(s)	544
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	2 cut(s)	231, 498
MbiI	CCGCTC	2 cut(s)	324, 369
MboI	GATC	2 cut(s)	229, 496
MboII	GAAGA	6 cut(s)	66, 281, 445, 503, 524, 646
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	418, 608
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	2 cut(s)	189, 405
MroNI	GCCGGC	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	216, 350
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	190, 304, 307, 375, 484
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	229, 496
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	43, 487
NlaIV	GGNNCC	3 cut(s)	50, 529, 668
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	674
PceI	AGGCCT	2 cut(s)	359, 683
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	617
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	50, 529, 668
PspPI	GGNCC	2 cut(s)	48, 352
PspPPI	RGGWCCY	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	229, 496
Sau96I	GGNCC	2 cut(s)	48, 352
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	11, 20, 50, 58, 105, 380, 483, 668, 726
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	728
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	2 cut(s)	418, 608
SseBI	AGGCCT	2 cut(s)	359, 683
StuI	AGGCCT	2 cut(s)	359, 683
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	674
TaqI	TCGA	3 cut(s)	396, 519, 562
TasI	AATT	2 cut(s)	418, 608
TauI	GCSGC	8 cut(s)	156, 187, 190, 193, 286, 301, 310, 324
TfiI	GAWTC	1 cut(s)	617
TscAI	CASTG	4 cut(s)	412, 592, 604, 677
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	4 cut(s)	156, 301, 304, 478
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	4 cut(s)	56, 237, 455, 525
TspGWI	ACGGA	2 cut(s)	316, 382
TspRI	CASTG	4 cut(s)	412, 592, 604, 677
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.