Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

61621058 .. 61622324

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG400500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAGACTCAAAGACCCAACCTTCCAGCCTCCTCGACTTCGCCGTCAACAACCACTTCTCCATGCTCCGCCTCGATTCCTCCTCCAAACCCCATTCCTCCGCCGCCTTGAAACGCCCCTCTCCGCCTCCCTCCCACCAACCTAACCCCAAGAAAGAGAAGCTCTCTCCTCCCCCCCTCTTCCCCGGCTTTTCCAAAATTACCCCTCTCCCTCCTCTCCCCAAATCCCACTCGGGTCTTGCCCGCAACCCGCTCCTCCGCCGCTGCATCTCCGACCCCTTCACCCCTCCTCGCCTTGATTCTCTCTCCGCTCCTCACGTCCCCGATTCCATTCACTCTCCCGAGAACGAGAATGACGTCGTTCCCAATTCCGCCGTCACTGCCATCACTTCGCCGCCGTCCGTGATCTCCAAGCGTCCGCCACCCCGCCCCACGCTCCACCGCACAGTCTCCGACCCCACCTCTTCCCCCGCCCCCAAATCCGCCTCCCGCGCTTCCTCCAGCTCCGGCGACGGCGACGACGATACCCCCAATACTAAGAGGAGGCTTAAGAGGATCAAAGATCGGTTCAGAGAGATGACGCTGTGGTTTGAACAAGTCATGCTTGAAGATGATGATGATGAGGAGGAAAAAGTACCAGAAATTCAACAAGAACAAGAAGAAGAGGAACAGATTATCAATAGTACTGAACCCACTGATGACCATGTCCAAGGTCTTGAAAACACTGCAGTCACTAAGGAGGATTGTGATCAAAAGAGGTTTGAGGAATCGGTGAGTGTGGAGAAGGTTGGGGAGTGCATTGTGATCCATTTCAGCTGCCACTGTGGGGTTCCCTATCAGTTTCTTCTTGCTGGAGGTAACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.5

Weight (kDa)

5.61

Isoelectric Point (pI)

70.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	360
AccBSI	CCGCTC	2 cut(s)	253, 311
AccII	CGCG	1 cut(s)	492
AclWI	GGATC	2 cut(s)	563, 799
AcsI	RAATTY	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	2 cut(s)	636, 685
AfiI	CCNNNNNNNGG	1 cut(s)	826
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	5 cut(s)	112, 593, 608, 647, 719
AjiI	CACGTC	1 cut(s)	319
AluBI	AGCT	4 cut(s)	163, 504, 816, 874
AluI	AGCT	4 cut(s)	163, 504, 816, 874
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	2 cut(s)	563, 799
Ama87I	CYCGRG	2 cut(s)	232, 341
ApeKI	GCWGC	2 cut(s)	264, 816
ApoI	RAATTY	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	494
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	274, 784
AvaI	CYCGRG	2 cut(s)	232, 341
BbvI	GCAGC	2 cut(s)	251, 803
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	4 cut(s)	29, 359, 382, 529
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	548
BisI	GCNGC	5 cut(s)	105, 262, 265, 395, 817
BlsI	GCNGC	5 cut(s)	106, 263, 266, 396, 818
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	1 cut(s)	186
BmeT110I	CYCGRG	2 cut(s)	232, 341
BmgBI	CACGTC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	484, 873
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	747
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	184, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	826
Bse8I	GATNNNNATC	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	184, 709
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	1 cut(s)	826
BseRI	GAGGAG	9 cut(s)	23, 73, 159, 204, 245, 279, 303, 556, 638
BseXI	GCAGC	2 cut(s)	251, 803
Bsh1236I	CGCG	1 cut(s)	492
BsiHKCI	CYCGRG	2 cut(s)	232, 341
BsiSI	CCGG	2 cut(s)	186, 507
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	826
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	232, 341
Bsp143I	GATC	5 cut(s)	405, 555, 562, 748, 804
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	831
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	2 cut(s)	563, 799
BspTI	CTTAAG	1 cut(s)	548
BsrBI	CCGCTC	2 cut(s)	253, 311
BssECI	CCNNGG	2 cut(s)	184, 709
BssMI	GATC	5 cut(s)	405, 555, 562, 748, 804
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	709
Bst4CI	ACNGT	2 cut(s)	448, 824
Bst6I	CTCTTC	3 cut(s)	185, 469, 657
BstACI	GRCGYC	1 cut(s)	357
BstAFI	CTTAAG	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	537, 735
BstFNI	CGCG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	5 cut(s)	408, 558, 565, 751, 807
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	5 cut(s)	405, 555, 562, 748, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 491
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	251, 803
BtrI	CACGTC	1 cut(s)	319
BtsI	GCAGTG	2 cut(s)	378, 723
BtsIMutI	CAGTG	4 cut(s)	378, 693, 723, 820
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	494
CseI	GACGC	2 cut(s)	404, 589
Csp6I	GTAC	2 cut(s)	635, 684
CviAII	CATG	4 cut(s)	64, 601, 704, 877
CviJI	RGCY	7 cut(s)	30, 163, 189, 504, 547, 816, 874
CviKI_1	RGCY	7 cut(s)	30, 163, 189, 504, 547, 816, 874
CviQI	GTAC	2 cut(s)	635, 684
DdeI	CTNAG	2 cut(s)	537, 735
DpnI	GATC	5 cut(s)	407, 557, 564, 750, 806
DpnII	GATC	5 cut(s)	405, 555, 562, 748, 804
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	185, 469, 657
EarI	CTCTTC	3 cut(s)	185, 469, 657
EciI	GGCGGA	7 cut(s)	59, 91, 114, 248, 361, 408, 472
Eco130I	CCWWGG	1 cut(s)	709
Eco88I	CYCGRG	2 cut(s)	232, 341
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	4 cut(s)	67, 604, 707, 880
FaiI	YATR	4 cut(s)	65, 602, 705, 878
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	4 cut(s)	63, 600, 703, 876
FauI	CCCGC	5 cut(s)	251, 258, 434, 478, 497
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	5 cut(s)	105, 262, 265, 395, 817
Fsp4HI	GCNGC	5 cut(s)	105, 262, 265, 395, 817
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	5 cut(s)	105, 262, 265, 395, 817
GsuI	CTGGAG	2 cut(s)	484, 873
HapII	CCGG	2 cut(s)	186, 507
HgaI	GACGC	2 cut(s)	404, 589
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	4 cut(s)	67, 604, 707, 880
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	8, 77, 299, 326, 767
HpaII	CCGG	2 cut(s)	186, 507
HphI	GGTGA	2 cut(s)	274, 784
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	274, 454, 572
Hpy188III	TCNNGA	2 cut(s)	341, 716
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	4 cut(s)	362, 515, 521, 524
HpyAV	CCTTC	3 cut(s)	33, 289, 778
HpyCH4III	ACNGT	2 cut(s)	448, 824
HpyCH4IV	ACGT	2 cut(s)	318, 357
HpyCH4V	TGCA	3 cut(s)	267, 728, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 491
HpyF3I	CTNAG	2 cut(s)	537, 735
HpySE526I	ACGT	2 cut(s)	318, 357
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	67, 604, 707, 880
HspAI	GCGC	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	5 cut(s)	405, 555, 562, 748, 804
LmnI	GCTCC	5 cut(s)	72, 258, 316, 441, 509
LpnPI	CCDG	6 cut(s)	40, 199, 514, 520, 651, 837
Lsp1109I	GCAGC	2 cut(s)	251, 803
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	2 cut(s)	318, 357
MaeIII	GTNAC	3 cut(s)	376, 730, 857
MalI	GATC	5 cut(s)	407, 557, 564, 750, 806
MbiI	CCGCTC	2 cut(s)	253, 311
MboI	GATC	5 cut(s)	405, 555, 562, 748, 804
MboII	GAAGA	6 cut(s)	172, 456, 620, 671, 674, 836
MluCI	AATT	3 cut(s)	198, 367, 642
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	2 cut(s)	297, 477
MseI	TTAA	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	264, 816
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	2 cut(s)	186, 507
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	380, 491
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	405, 555, 562, 748, 804
NlaIII	CATG	4 cut(s)	67, 604, 707, 880
NlaIV	GGNNCC	1 cut(s)	831
NmuCI	GTSAC	2 cut(s)	376, 730
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 354, 519
PfeI	GAWTC	4 cut(s)	77, 299, 326, 767
PflFI	GACNNNGTC	1 cut(s)	704
PkrI	GCNGC	5 cut(s)	106, 263, 266, 396, 818
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PspN4I	GGNNCC	1 cut(s)	831
PstI	CTGCAG	1 cut(s)	730
PsyI	GACNNNGTC	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	816
RsaI	GTAC	2 cut(s)	636, 685
RsaNI	GTAC	2 cut(s)	635, 684
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	5 cut(s)	105, 262, 265, 395, 817
Sau3AI	GATC	5 cut(s)	405, 555, 562, 748, 804
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	3 cut(s)	198, 367, 642
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	2 cut(s)	448, 824
TaiI	ACGT	2 cut(s)	321, 360
TaqI	TCGA	2 cut(s)	36, 75
TasI	AATT	3 cut(s)	198, 367, 642
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	3 cut(s)	107, 264, 397
TfiI	GAWTC	4 cut(s)	77, 299, 326, 767
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	4 cut(s)	385, 700, 730, 827
TseFI	GTSAC	2 cut(s)	376, 730
TseI	GCWGC	2 cut(s)	264, 816
Tsp45I	GTSAC	2 cut(s)	376, 730
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	4 cut(s)	385, 700, 730, 827
Tth111I	GACNNNGTC	1 cut(s)	704
Vha464I	CTTAAG	1 cut(s)	548
XapI	RAATTY	1 cut(s)	642
ZraI	GACGTC	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.