Rroxscaffold_5G00383290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
62928193 .. 62928977
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383290.1

Sequence Viewer

Length: 312 bp
ATGGAGGACTCCTTGCAATGGATTGCACCACTGGCACAGGTATTGATCATGCCGGTGGACGTTGAAGAAGATAGAAAGAAAGTATACGAGAGAGCTAGTCCTGTAGGACATGGACGAATGAGAATGGAGGATTGTGATCAAAAGAGATTTGAGGAATCAGTGAGTGTGGAGAAGGTTTGGGAGTGCATTGTGATCATTTCAGCTGCCACTGTGGGCCTCCCTATCAGTTTCTTCTTGCTGGAGGCAACTGCTACTACTAAAGCTTATGTCGTAGAAGACTGTCTCTGTAGATTTCACTACCGACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.85

Weight (kDa)

4.89

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 3 cut(s) 95, 203, 263
AluI AGCT 3 cut(s) 95, 203, 263
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 190
BclI TGATCA 3 cut(s) 45, 136, 192
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 2 cut(s) 102, 286
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 45, 136, 192
BspANI GGCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 52
BssMI GATC 3 cut(s) 45, 136, 192
BssNAI GTATAC 1 cut(s) 85
Bst1107I GTATAC 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 211, 281
BstKTI GATC 3 cut(s) 48, 139, 195
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 45, 136, 192
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSFI CTRYAG 2 cut(s) 102, 286
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 282
BstZ17I GTATAC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 29, 165, 207
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 214
CviAII CATG 2 cut(s) 49, 110
CviJI RGCY 4 cut(s) 95, 203, 216, 263
CviKI_1 RGCY 4 cut(s) 95, 203, 216, 263
DpnI GATC 3 cut(s) 47, 138, 194
DpnII GATC 3 cut(s) 45, 136, 192
FaeI CATG 2 cut(s) 52, 113
FaiI YATR 4 cut(s) 50, 85, 111, 267
FatI CATG 2 cut(s) 48, 109
FbaI TGATCA 3 cut(s) 45, 136, 192
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 52, 113
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 2 cut(s) 8, 155
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 58, 85
Hpy8I GTNNAC 2 cut(s) 58, 85
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 211, 281
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 16, 26, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 52, 113
Ksp22I TGATCA 3 cut(s) 45, 136, 192
Kzo9I GATC 3 cut(s) 45, 136, 192
LpnPI CCDG 5 cut(s) 17, 23, 66, 114, 224
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 60
MalI GATC 3 cut(s) 47, 138, 194
MboI GATC 3 cut(s) 45, 136, 192
MboII GAAGA 4 cut(s) 77, 80, 223, 287
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 4 cut(s) 121, 145, 227, 235
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 3 cut(s) 45, 136, 192
NlaIII CATG 2 cut(s) 52, 113
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspPI GGNCC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 3 cut(s) 45, 136, 192
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 2
SetI ASST 6 cut(s) 42, 63, 97, 177, 205, 265
SfcI CTRYAG 2 cut(s) 102, 286
SmiMI CAYNNNNRTG 1 cut(s) 53
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 211, 281
TaiI ACGT 1 cut(s) 63
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 3 cut(s) 36, 165, 214
TseI GCWGC 1 cut(s) 203
TspRI CASTG 3 cut(s) 36, 165, 214
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.