Rh4CG421900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002328
Physical Location & Seq
Reverse (-)
66565177 .. 66566826
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG421900.1

Sequence Viewer

Length: 726 bp
ATGGCAGACTCAAACACCCACCTCGACTTCGCCGTCAACAACCACTTCTCCATGCTCCGCCTCGATTCCTCCGCCGCCTTGAAACGCCCCTCTCCGCCTTCCTCCCACCAACCCAACCCCAAGAAAGAGAAGCTCTCTCCTCCTCCTCCCCTCTTCCCCGGCTTTTCCAAAATTACCCCTCTCCCTCCTCTCCCCAAATCCCACTCGGGTCTTGCCCGAACCCGACCCCGCAACCCGCTCCTCCGCCGCTGCATCTCCGACCCCTTCACCCCTCCTCGCCTTGATTCTCTCTCCGCTCCTCCCGTCCCCGATTCCATCCTCTCTCCCGAGAACGACGTCACTGCCATCACTTCCCCGCCGTCCGTGATCTCCACGCGTCCGCCACCCCGTCCCACGCTCCACCGCACAGTCTCCGACCCCACCTCTTCCCCCGCCCCCAAATCCGCCTCCCGCACTTCCTCCAGCTCCGGCGACGACGATACCCCCAACACTAAGAGGAGGCTTAAGAGGATCAAAGATCGGTTCAGAGAGATGACGCTCTGGTTTGAACAAGTCATGCTTGAAGATGAAGATGATGATGAGGAAAAAGTACCAGAAATTCAACAAGAACAAGAAGAAGAGGAACAGATTATCAATACTGAACCCACTGATGACCATGTCCAAGGTCTTGAAAACACTGCAGTCACTAAGGTACTTATTATCGAAATTCGATTCCGAGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.0

Weight (kDa)

5.74

Isoelectric Point (pI)

73.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AatII GACGTC 1 cut(s) 339
AccBSI CCGCTC 2 cut(s) 238, 296
AccII CGCG 1 cut(s) 376
AclWI GGATC 1 cut(s) 518
AcsI RAATTY 2 cut(s) 597, 705
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 2 cut(s) 591, 693
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 5 cut(s) 82, 548, 563, 602, 671
AluBI AGCT 2 cut(s) 133, 465
AluI AGCT 2 cut(s) 133, 465
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 2 cut(s) 205, 326
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 597, 705
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 2 cut(s) 205, 326
BbvI GCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 323, 353
BceAI ACGGC 2 cut(s) 17, 343
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 415
BfmI CTRYAG 1 cut(s) 678
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 3 cut(s) 75, 247, 250
BlsI GCNGC 3 cut(s) 76, 248, 251
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 2 cut(s) 205, 326
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 157, 661
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
BseDI CCNNGG 2 cut(s) 157, 661
BseGI GGATG 1 cut(s) 315
BseRI GAGGAG 8 cut(s) 129, 132, 135, 177, 230, 264, 288, 511
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 376
BsiHKCI CYCGRG 2 cut(s) 205, 326
BsiSI CCGG 2 cut(s) 159, 468
BslFI GGGAC 2 cut(s) 290, 375
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 290, 375
BsoBI CYCGRG 2 cut(s) 205, 326
Bsp143I GATC 3 cut(s) 366, 510, 517
BspFNI CGCG 1 cut(s) 376
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 503
BsrBI CCGCTC 2 cut(s) 238, 296
BssECI CCNNGG 2 cut(s) 157, 661
BssMI GATC 3 cut(s) 366, 510, 517
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 3 cut(s) 158, 430, 612
BstACI GRCGYC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 503
BstDEI CTNAG 2 cut(s) 492, 687
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 376
BstKTI GATC 3 cut(s) 369, 513, 520
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 3 cut(s) 366, 510, 517
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 315
BtsI GCAGTG 2 cut(s) 339, 675
BtsIMutI CAGTG 3 cut(s) 339, 645, 675
CseI GACGC 2 cut(s) 365, 544
Csp6I GTAC 2 cut(s) 590, 692
CviAII CATG 3 cut(s) 52, 556, 656
CviJI RGCY 4 cut(s) 133, 162, 465, 502
CviKI_1 RGCY 4 cut(s) 133, 162, 465, 502
CviQI GTAC 2 cut(s) 590, 692
DdeI CTNAG 2 cut(s) 492, 687
DpnI GATC 3 cut(s) 368, 512, 519
DpnII GATC 3 cut(s) 366, 510, 517
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 3 cut(s) 158, 430, 612
EarI CTCTTC 3 cut(s) 158, 430, 612
EciI GGCGGA 6 cut(s) 47, 61, 84, 233, 369, 433
Eco130I CCWWGG 1 cut(s) 661
Eco88I CYCGRG 2 cut(s) 205, 326
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 3 cut(s) 55, 559, 659
FaiI YATR 3 cut(s) 53, 557, 657
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 2 cut(s) 290, 375
FatI CATG 3 cut(s) 51, 555, 655
FauI CCCGC 5 cut(s) 236, 243, 363, 439, 458
Fnu4HI GCNGC 3 cut(s) 75, 247, 250
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 3 cut(s) 75, 247, 250
GluI GCNGC 3 cut(s) 75, 247, 250
GsuI CTGGAG 1 cut(s) 445
HapII CCGG 2 cut(s) 159, 468
HgaI GACGC 2 cut(s) 365, 544
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 3 cut(s) 55, 559, 659
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 5 cut(s) 8, 65, 284, 311, 711
HpaII CCGG 2 cut(s) 159, 468
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 259, 415, 527, 716
Hpy188III TCNNGA 2 cut(s) 326, 668
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 3 cut(s) 338, 476, 479
HpyAV CCTTC 2 cut(s) 108, 274
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 252, 680
HpyF3I CTNAG 2 cut(s) 492, 687
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 3 cut(s) 55, 559, 659
Kzo9I GATC 3 cut(s) 366, 510, 517
LmnI GCTCC 5 cut(s) 60, 243, 301, 402, 470
LpnPI CCDG 5 cut(s) 172, 475, 481, 526, 606
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 261
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 337, 682
MalI GATC 3 cut(s) 368, 512, 519
MbiI CCGCTC 2 cut(s) 238, 296
MboI GATC 3 cut(s) 366, 510, 517
MboII GAAGA 6 cut(s) 145, 417, 575, 581, 626, 629
MluCI AATT 3 cut(s) 171, 597, 705
MluI ACGCGT 1 cut(s) 374
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 2 cut(s) 282, 438
MseI TTAA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 2 cut(s) 159, 468
MspR9I CCNGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 376
NciI CCSGG 1 cut(s) 159
NdeII GATC 3 cut(s) 366, 510, 517
NlaIII CATG 3 cut(s) 55, 559, 659
NmuCI GTSAC 2 cut(s) 337, 682
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 4 cut(s) 65, 284, 311, 711
PflFI GACNNNGTC 1 cut(s) 656
PkrI GCNGC 3 cut(s) 76, 248, 251
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PstI CTGCAG 1 cut(s) 682
PsyI GACNNNGTC 1 cut(s) 656
RsaI GTAC 2 cut(s) 591, 693
RsaNI GTAC 2 cut(s) 590, 692
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 3 cut(s) 75, 247, 250
Sau3AI GATC 3 cut(s) 366, 510, 517
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 159
SetI ASST 7 cut(s) 24, 135, 339, 425, 467, 667, 693
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 3 cut(s) 171, 597, 705
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 1 cut(s) 339
TaqI TCGA 4 cut(s) 24, 63, 702, 709
TasI AATT 3 cut(s) 171, 597, 705
TauI GCSGC 2 cut(s) 77, 249
TfiI GAWTC 4 cut(s) 65, 284, 311, 711
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 3 cut(s) 346, 652, 682
TseFI GTSAC 2 cut(s) 337, 682
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 2 cut(s) 337, 682
TspDTI ATGAA 1 cut(s) 582
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 3 cut(s) 346, 652, 682
Tth111I GACNNNGTC 1 cut(s) 656
Vha464I CTTAAG 1 cut(s) 503
XapI RAATTY 2 cut(s) 597, 705
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.